RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 C7orf25Q9BPX7 421 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 BTG4Q9NY30 223 aa19.53■□□□□ 0.72
SYNE3-202ENST00000553340 A0A087WUV0 522 aaPredicted RBP19.52■□□□□ 0.72
SYNE3-202ENST00000553340 OPA1O60313 960 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 ADAMTS2O95450 1211 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 PLEKP08567 350 aaPredicted RBP19.52■□□□□ 0.72
SYNE3-202ENST00000553340 HDAC7Q8WUI4 952 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 ALS2CR12Q96Q35 445 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 HINFPQ9BQA5 517 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 DEF6Q9H4E7 631 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 DMGDHQ9UI17 866 aaKnown RBP19.52■□□□□ 0.72
SYNE3-202ENST00000553340 FLT1P17948 1338 aa19.52■□□□□ 0.72
SYNE3-202ENST00000553340 CRKLP46109 303 aaKnown RBP19.52■□□□□ 0.71
SYNE3-202ENST00000553340 AMPD3Q01432 767 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 EZH2Q15910 746 aaKnown RBP19.52■□□□□ 0.71
SYNE3-202ENST00000553340 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.52■□□□□ 0.71
SYNE3-202ENST00000553340 C2CD5Q86YS7 1000 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 DRC1Q96MC2 740 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 OSBPL9Q96SU4 736 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 CAPS2Q9BXY5 557 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 BSDC1Q9NW68 430 aaPredicted RBP19.52■□□□□ 0.71
SYNE3-202ENST00000553340 SLAIN2Q9P270 581 aa19.52■□□□□ 0.71
SYNE3-202ENST00000553340 LAMB1P07942 1786 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 LAMB2P55268 1798 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 EXOC5O00471 708 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 KIF11P52732 1056 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 TFAP4Q01664 338 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 GRM4Q14833 912 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 CCDC181Q5TID7 509 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 ICE2Q659A1 982 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 CNNM4Q6P4Q7 775 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 HEATR3Q7Z4Q2 680 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 TADA2BQ86TJ2 420 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 MLXIPQ9HAP2 919 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 ARHGAP20Q9P2F6 1191 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 HYOU1Q9Y4L1 999 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 COL4A1P02462 1669 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 EBAG9O00559 213 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 MOCS3O95396 460 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 CPP00450 1065 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 FCER1AP12319 257 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 EPHB4P54760 987 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 TXNRD1Q16881 649 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 SH3GL2Q99962 352 aa19.51■□□□□ 0.71
SYNE3-202ENST00000553340 AKR1B10O60218 316 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 OR52Z1P0C646 297 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 CCT5P48643 541 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 EMBQ6PCB8 327 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 RRP36Q96EU6 259 aaKnown RBP19.5■□□□□ 0.71
SYNE3-202ENST00000553340 BARHL2Q9NY43 387 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 MINPP1Q9UNW1 487 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 LCA5LO95447 670 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 MATR3P43243 847 aaKnown RBP eCLIP19.5■□□□□ 0.71
SYNE3-202ENST00000553340 COBLL1Q53SF7 1204 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 IL17RBQ9NRM6 502 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 MCM9Q9NXL9 1143 aa19.5■□□□□ 0.71
SYNE3-202ENST00000553340 EIF4A3P38919 411 aaKnown RBP19.49■□□□□ 0.71
SYNE3-202ENST00000553340 PAFAH1B1P43034 410 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 VWA3BQ502W6 1294 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 ALS2CLQ60I27 953 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 NFRKBQ6P4R8 1299 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 RUFY1Q96T51 708 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 STIM2Q9P246 746 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 MAD2L2Q9UI95 211 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 SCN7AQ01118 1682 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 SHTN1A0MZ66 631 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 STXBP3O00186 592 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 ATP6V1AP38606 617 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 NT5C2P49902 561 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 SLC7A5Q01650 507 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 FBXO33Q7Z6M2 555 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 CCDC84Q86UT8 332 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-202ENST00000553340 BCAS4Q8TDM0 211 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 ANKS1AQ92625 1134 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 NDST4Q9H3R1 872 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 FAM207AQ9NSI2 230 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-202ENST00000553340 MYH1P12882 1939 aa19.49■□□□□ 0.71
SYNE3-202ENST00000553340 EIF3HO15372 352 aaKnown RBP eCLIP19.48■□□□□ 0.71
SYNE3-202ENST00000553340 EPB41P11171 864 aaKnown RBP19.48■□□□□ 0.71
SYNE3-202ENST00000553340 SIK3Q9Y2K2 1263 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 NKRFO15226 690 aaKnown RBP eCLIP19.48■□□□□ 0.71
SYNE3-202ENST00000553340 GNGT1P63211 74 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 SF3B2Q13435 895 aaKnown RBP19.48■□□□□ 0.71
SYNE3-202ENST00000553340 CENPPQ6IPU0 288 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 KIAA0895Q8NCT3 520 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 SEMA6BQ9H3T3 888 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 MMRN2Q9H8L6 949 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 CASZ1Q86V15 1759 aa19.48■□□□□ 0.71
SYNE3-202ENST00000553340 XIRP1Q702N8 1843 aaKnown RBP19.47■□□□□ 0.71
SYNE3-202ENST00000553340 A6NNZ2 444 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 HSF2BPO75031 334 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 CXCR5P32302 372 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 SLC4A8Q2Y0W8 1093 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 TUBB8Q3ZCM7 444 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 MICALL1Q8N3F8 863 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 CAVIN3Q969G5 261 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 PSMB7Q99436 277 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 CYTH3O43739 400 aa19.47■□□□□ 0.71
SYNE3-202ENST00000553340 CCNT1O60563 726 aaKnown RBP19.47■□□□□ 0.71
SYNE3-202ENST00000553340 FGFR1OPO95684 399 aaKnown RBP19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms