RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 COL4A5P29400 1685 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 SOWAHDA6NJG2 315 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 N4BP3O15049 544 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 EGFRP00533 1210 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 UBXN2AP68543 259 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 PDE4DQ08499 809 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 ZNF658Q5TYW1 1059 aaPredicted RBP12.47□□□□□ -0.41
CUX1-212ENST00000547394 NYAP1Q6ZVC0 841 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 IGSF22Q8N9C0 903 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 PRIMPOLQ96LW4 560 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 IDI2Q9BXS1 227 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 KANSL2Q9H9L4 492 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.47□□□□□ -0.416e-7■■■■■ 48.9
CUX1-212ENST00000547394 FANCGO15287 622 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 IGSF3O75054 1194 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 IDEP14735 1019 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 KCNA3P22001 575 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 GRB10Q13322 594 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 LRRC41Q15345 812 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 CDKAL1Q5VV42 579 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 TMEM139Q8IV31 216 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 TBC1D5Q92609 795 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 CUL5Q93034 780 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 TBC1D7Q9P0N9 293 aa12.47□□□□□ -0.41
CUX1-212ENST00000547394 ADD3Q9UEY8 706 aaKnown RBP12.47□□□□□ -0.41
CUX1-212ENST00000547394 DDX25Q9UHL0 483 aaKnown RBP12.47□□□□□ -0.41
CUX1-212ENST00000547394 A0A1B0GTH6 734 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 CASP14P31944 242 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 NBPF9Q3BBW0 867 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 CYP2W1Q8TAV3 490 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 SNX29Q8TEQ0 813 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 HAS1Q92839 578 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 PNMA5Q96PV4 448 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 MTMR9Q96QG7 549 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 BAG1Q99933 345 aaPredicted RBP12.46□□□□□ -0.41
CUX1-212ENST00000547394 IRX2Q9BZI1 471 aaPredicted RBP12.46□□□□□ -0.41
CUX1-212ENST00000547394 TRIM9Q9C026 710 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 DHX36Q9H2U1 1008 aaKnown RBP12.46□□□□□ -0.41
CUX1-212ENST00000547394 RIC8AQ9NPQ8 531 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 KBTBD4Q9NVX7 518 aa12.46□□□□□ -0.41
CUX1-212ENST00000547394 FOCADQ5VW36 1801 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 KCNJ18B7U540 433 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 FXR1P51114 621 aaKnown RBP eCLIP12.46□□□□□ -0.42
CUX1-212ENST00000547394 KCNJ12Q14500 433 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 GPATCH4Q5T3I0 446 aaKnown RBP12.46□□□□□ -0.42
CUX1-212ENST00000547394 CCDC174Q6PII3 467 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 FCHSD1Q86WN1 690 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 IRF2BP1Q8IU81 584 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 TRIM47Q96LD4 638 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 SRRTQ9BXP5 876 aaKnown RBP12.46□□□□□ -0.42
CUX1-212ENST00000547394 CCSER1Q9C0I3 900 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 EHD4Q9H223 541 aa12.46□□□□□ -0.42
CUX1-212ENST00000547394 MYH4Q9Y623 1939 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 NPHP3-ACAD11A0A0J9YXS1 232 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 SPDYE2BA6NHP3 402 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 MYMKA6NI61 221 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 SPDYE6P0CI01 402 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 TBX2Q13207 712 aaPredicted RBP12.45□□□□□ -0.42
CUX1-212ENST00000547394 DLGAP5Q15398 846 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 CC2D2BQ6DHV5 1058 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 CCDC112Q8NEF3 446 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 CDK5RAP3Q96JB5 506 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 CCDC17Q96LX7 622 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 BLOC1S4Q9NUP1 217 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 FZD1Q9UP38 647 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 MORC2Q9Y6X9 1032 aaPredicted RBP12.45□□□□□ -0.42
CUX1-212ENST00000547394 KLK7P49862 253 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 TATDN1Q6P1N9 297 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 RSBN1LQ6PCB5 846 aaPredicted RBP12.45□□□□□ -0.42
CUX1-212ENST00000547394 FBXO28Q9NVF7 368 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 ZNF70Q9UC06 446 aaPredicted RBP12.45□□□□□ -0.42
CUX1-212ENST00000547394 DNAI1Q9UI46 699 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 SIPA1L1O43166 1804 aa12.45□□□□□ -0.42
CUX1-212ENST00000547394 DYNC1I1O14576 645 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 CCDC93Q567U6 631 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 PRR16Q569H4 304 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 FAM83BQ5T0W9 1011 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 ADSSL1Q8N142 457 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 RWDD2AQ9UIY3 292 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 TNS1Q9HBL0 1735 aaKnown RBP12.44□□□□□ -0.42
CUX1-212ENST00000547394 ESYT2A0FGR8 921 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 MEIS1O00470 390 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 ASTN2O75129 1339 aaPredicted RBP12.44□□□□□ -0.42
CUX1-212ENST00000547394 PRPHP41219 470 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 MRPL12P52815 198 aaKnown RBP12.44□□□□□ -0.42
CUX1-212ENST00000547394 TERF1P54274 439 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 TCP11X2Q5H9J9 407 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 TMEM179Q6ZVK1 233 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 OGFOD1Q8N543 542 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 KIFC2Q96AC6 838 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 CALML4Q96GE6 196 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 EXOC1Q9NV70 894 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 ZNF215Q9UL58 517 aaPredicted RBP12.44□□□□□ -0.42
CUX1-212ENST00000547394 E9PMD0 336 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 GYPCP04921 128 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 SMARCA1P28370 1054 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 NT5C2P49902 561 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 COPB1P53618 953 aaKnown RBP12.44□□□□□ -0.42
CUX1-212ENST00000547394 UBXN1Q04323 297 aa12.44□□□□□ -0.42
CUX1-212ENST00000547394 SF3B2Q13435 895 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms