RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 ZNF543Q08ER8 600 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 CDC42EP5Q6NZY7 148 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 COL23A1Q86Y22 540 aaPredicted RBP29.25■■■□□ 2.27
HLA-C-208ENST00000487245 MB21D1Q8N884 522 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 CALML4Q96GE6 196 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 CCDC17Q96LX7 622 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 EHD4Q9H223 541 aa29.25■■■□□ 2.27
HLA-C-208ENST00000487245 POTEB2H3BUK9 544 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 RNF225M0QZC1 329 aaPredicted RBP29.24■■■□□ 2.27
HLA-C-208ENST00000487245 ARHGAP25P42331 645 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 UBXN1Q04323 297 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 DOK7Q18PE1 504 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 ZNF569Q5MCW4 686 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 GPATCH4Q5T3I0 446 aaKnown RBP29.24■■■□□ 2.27
HLA-C-208ENST00000487245 ZNF771Q7L3S4 317 aaPredicted RBP29.24■■■□□ 2.27
HLA-C-208ENST00000487245 LRRC47Q8N1G4 583 aaKnown RBP29.24■■■□□ 2.27
HLA-C-208ENST00000487245 PARD6BQ9BYG5 372 aa29.24■■■□□ 2.27
HLA-C-208ENST00000487245 ZHX1Q9UKY1 873 aaPredicted RBP29.24■■■□□ 2.27
HLA-C-208ENST00000487245 CTAGE9A4FU28 777 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 KRT9P35527 623 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 BRD3Q15059 726 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 PODNQ7Z5L7 613 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 A0A0U1RQJ8 604 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 TBC1D8O95759 1140 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 SHMT1P34896 483 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 CHMP4BP1P59074 171 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 TTI2Q6NXR4 508 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 ACRBPQ8NEB7 543 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 ATRIPQ8WXE1 791 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 DNAJC7Q99615 494 aa29.23■■■□□ 2.27
HLA-C-208ENST00000487245 FXR2P51116 673 aaKnown RBP eCLIP29.22■■■□□ 2.27
HLA-C-208ENST00000487245 FKBP1AP62942 108 aaKnown RBP29.22■■■□□ 2.27
HLA-C-208ENST00000487245 TMEM266Q2M3C6 531 aa29.22■■■□□ 2.27
HLA-C-208ENST00000487245 COBLL1Q53SF7 1204 aa29.22■■■□□ 2.27
HLA-C-208ENST00000487245 MTMR9Q96QG7 549 aa29.22■■■□□ 2.27
HLA-C-208ENST00000487245 RAB34Q9BZG1 259 aa29.22■■■□□ 2.27
HLA-C-208ENST00000487245 CCDC151A5D8V7 595 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 HOXA7P31268 230 aaPredicted RBP29.21■■■□□ 2.27
HLA-C-208ENST00000487245 TECP42680 631 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 APOBEC3HQ6NTF7 200 aaKnown RBP29.21■■■□□ 2.27
HLA-C-208ENST00000487245 OR8K1Q8NGG5 319 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 PLIN2Q99541 437 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 ARFGAP3Q9NP61 516 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 GPCPD1Q9NPB8 672 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 RIC8AQ9NPQ8 531 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 SCNN1DP51172 638 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 CALCRLQ16602 461 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 SLC35F6Q8N357 371 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 COA7Q96BR5 231 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 NAPGQ99747 312 aaPredicted RBP29.21■■■□□ 2.27
HLA-C-208ENST00000487245 TRIM9Q9C026 710 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 EXOC1Q9NV70 894 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 MAGEC2Q9UBF1 373 aaPredicted RBP29.21■■■□□ 2.27
HLA-C-208ENST00000487245 CAPN11Q9UMQ6 739 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 MAPK8IP1Q9UQF2 711 aa29.21■■■□□ 2.27
HLA-C-208ENST00000487245 BICDL2A1A5D9 508 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 TRIM49BA6NDI0 452 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 DNM2P50570 870 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 PDIA5Q14554 519 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 WHAMMP3Q1A5X7 153 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 ZNF662Q6ZS27 426 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 MSANTD4Q8NCY6 345 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 ZDHHC15Q96MV8 337 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 JMJD4Q9H9V9 463 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 TMEM260Q9NX78 707 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 STK17AQ9UEE5 414 aa29.2■■■□□ 2.26
HLA-C-208ENST00000487245 SEC31AO94979 1220 aaKnown RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 PMS1P54277 932 aaKnown RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 KIF4BQ2VIQ3 1234 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 LRRC15Q8TF66 581 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 HNRNPLLQ8WVV9 542 aaKnown RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 EPC1Q9H2F5 836 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 DHX36Q9H2U1 1008 aaKnown RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 EPN1Q9Y6I3 576 aaPredicted RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 CRKP46108 304 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 HDLBPQ00341 1268 aaKnown RBP29.19■■■□□ 2.26
HLA-C-208ENST00000487245 POTEDQ86YR6 584 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 ADGRF4Q8IZF3 695 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 TRIM47Q96LD4 638 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 GLT8D2Q9H1C3 349 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 RAB21Q9UL25 225 aa29.19■■■□□ 2.26
HLA-C-208ENST00000487245 TTC26A0AVF1 554 aa29.18■■■□□ 2.26
HLA-C-208ENST00000487245 CCNE1P24864 410 aa29.18■■■□□ 2.26
HLA-C-208ENST00000487245 MRPL12P52815 198 aaKnown RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 EIF6P56537 245 aaKnown RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 RETREG2Q8NC44 543 aa29.18■■■□□ 2.26
HLA-C-208ENST00000487245 DUSP9Q99956 384 aaKnown RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 MMTAG2Q9BU76 263 aaKnown RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 MXD3Q9BW11 206 aa29.18■■■□□ 2.26
HLA-C-208ENST00000487245 ST7Q9NRC1 585 aa29.18■■■□□ 2.26
HLA-C-208ENST00000487245 LUC7L2Q9Y383 392 aaKnown RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 GREB1LQ9C091 1923 aaPredicted RBP29.18■■■□□ 2.26
HLA-C-208ENST00000487245 NDUFA10O95299 355 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 MMP10P09238 476 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 PDE4DQ08499 809 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 PPP4R3AQ6IN85 833 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 CNNM4Q6P4Q7 775 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 FAM114A1Q8IWE2 563 aa29.17■■■□□ 2.26
HLA-C-208ENST00000487245 NAP1L4Q99733 375 aaKnown RBP29.17■■■□□ 2.26
HLA-C-208ENST00000487245 NUP58Q9BVL2 599 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms