RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	SPA17	Q15506	151 aa		11.98	□□□□□ -0.49
LSS-208	ENST00000474319	GRIK5	Q16478	980 aa		11.98	□□□□□ -0.49
LSS-208	ENST00000474319	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.98	□□□□□ -0.49
LSS-208	ENST00000474319	CAPN6	Q9Y6Q1	641 aa		11.98	□□□□□ -0.49
LSS-208	ENST00000474319	MYH8	P13535	1937 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	SCNN1D	P51172	638 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	WHAMMP3	Q1A5X7	153 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	NELFCD	Q8IXH7	590 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	SH2D3C	Q8N5H7	860 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	AFAP1L1	Q8TED9	768 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	GOLPH3	Q9H4A6	298 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	CNTNAP4	Q9C0A0	1308 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	LIG3	P49916	1009 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	GTF2I	P78347	998 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	KIF5A	Q12840	1032 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	NAALADL2	Q58DX5	795 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	CABP7	Q86V35	215 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	LRRC1	Q9BTT6	524 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	LIMA1	Q9UHB6	759 aa	Known RBP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	DMGDH	Q9UI17	866 aa	Known RBP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	DOT1L	Q8TEK3	1739 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	ABCA3	Q99758	1704 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	PNPLA7	Q6ZV29	1317 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	PKD1L3	Q7Z443	1732 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	KRT86	O43790	486 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	SPAG1	Q07617	926 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	SRL	Q86TD4	932 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	DBNDD1	Q9H9R9	158 aa		11.97	□□□□□ -0.49
LSS-208	ENST00000474319	BSDC1	Q9NW68	430 aa	Predicted RBP	11.97	□□□□□ -0.49
LSS-208	ENST00000474319	RASSF7	Q02833	373 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	LRRC31	Q6UY01	552 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.96	□□□□□ -0.49
LSS-208	ENST00000474319	MICALL1	Q8N3F8	863 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	SELENOO	Q9BVL4	669 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	UBXN6	Q9BZV1	441 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	TCP11L1	Q9NUJ3	509 aa		11.96	□□□□□ -0.49
LSS-208	ENST00000474319	RBM28	Q9NW13	759 aa	Known RBP	11.96	□□□□□ -0.49
LSS-208	ENST00000474319	POTEM	A6NI47	508 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	LGALS16	A8MUM7	142 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	CACNA2D4	Q7Z3S7	1137 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	ADSSL1	Q8N142	457 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.96	□□□□□ -0.5
LSS-208	ENST00000474319	IFIH1	Q9BYX4	1025 aa	Known RBP	11.96	□□□□□ -0.5
LSS-208	ENST00000474319	RMND1	Q9NWS8	449 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	SCAF8	Q9UPN6	1271 aa	Known RBP	11.96	□□□□□ -0.5
LSS-208	ENST00000474319	MYH2	Q9UKX2	1941 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	GPSM2	P81274	684 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	PFKFB3	Q16875	520 aa	Predicted RBP	11.96	□□□□□ -0.5
LSS-208	ENST00000474319	TNFRSF25	Q93038	417 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	SECISBP2L	Q93073	1101 aa	Known RBP	11.96	□□□□□ -0.5
LSS-208	ENST00000474319	COA7	Q96BR5	231 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	CDK5RAP3	Q96JB5	506 aa		11.96	□□□□□ -0.5
LSS-208	ENST00000474319	ATP8B1	O43520	1251 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	FTCD	O95954	541 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	CYLC1	P35663	651 aa	Predicted RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	EIF4A3	P38919	411 aa	Known RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	USP14	P54578	494 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	GFPT1	Q06210	699 aa	Predicted RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	NSUN4	Q96CB9	384 aa	Known RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	ADAMTS7	Q9UKP4	1686 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	PLCH1	Q4KWH8	1693 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	TJP1	Q07157	1748 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	GOLGA6B	A6NDN3	693 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	POTEB2	H3BUK9	544 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319		H7C1D1	291 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	TNNI2	P48788	182 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	MSANTD4	Q8NCY6	345 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	GBP3	Q9H0R5	595 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	ACBD3	Q9H3P7	528 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	IL17RB	Q9NRM6	502 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	AKAP11	Q9UKA4	1901 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	MYH14	Q7Z406	1995 aa	Known RBP	11.95	□□□□□ -0.5
LSS-208	ENST00000474319	C4A	P0C0L4	1744 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	C4B	P0C0L5	1744 aa		11.95	□□□□□ -0.5
LSS-208	ENST00000474319	GOLGA6C	A6NDK9	693 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	EIF3CL	B5ME19	914 aa	Known RBP	11.94	□□□□□ -0.5
LSS-208	ENST00000474319	BACH1	O14867	736 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	CYTH3	O43739	400 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	GOLGA6D	P0CG33	693 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	KIF5B	P33176	963 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	AMPD2	Q01433	879 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	RC3H1	Q5TC82	1133 aa	Known RBP	11.94	□□□□□ -0.5
LSS-208	ENST00000474319	RUFY1	Q96T51	708 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	EIF3C	Q99613	913 aa	Known RBP	11.94	□□□□□ -0.5
LSS-208	ENST00000474319	GPCPD1	Q9NPB8	672 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	GOLGA6A	Q9NYA3	693 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	GGA1	Q9UJY5	639 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	PCDHA6	Q9UN73	950 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	PCDHA8	Q9Y5H6	950 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	KLRF2	D3W0D1	207 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	SLC35G1	Q2M3R5	365 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	TRAPPC11	Q7Z392	1133 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	POTED	Q86YR6	584 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	HAUS4	Q9H6D7	363 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	RAB21	Q9UL25	225 aa		11.94	□□□□□ -0.5
LSS-208	ENST00000474319	HPCAL4	Q9UM19	191 aa		11.94	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms