RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PALM3A6NDB9 673 aaPredicted RBP22.63■■□□□ 1.21
USP40-207ENST00000450940 KIAA0355O15063 1070 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 CALML3P27482 149 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 CDK7P50613 346 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 QRICH1Q2TAL8 776 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 USH1GQ495M9 461 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 BMP2KLQ5H9B9 411 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 FBXO16Q8IX29 292 aaPredicted RBP22.63■■□□□ 1.21
USP40-207ENST00000450940 STAG2Q8N3U4 1231 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 TRIM43Q96BQ3 446 aaPredicted RBP22.63■■□□□ 1.21
USP40-207ENST00000450940 GLT1D1Q96MS3 346 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 MAD2L2Q9UI95 211 aa22.63■■□□□ 1.21
USP40-207ENST00000450940 KLRF2D3W0D1 207 aa22.62■■□□□ 1.21
USP40-207ENST00000450940 IFIT3O14879 490 aaKnown RBP22.62■■□□□ 1.21
USP40-207ENST00000450940 CLTBP09497 229 aa22.62■■□□□ 1.21
USP40-207ENST00000450940 EEPD1Q7L9B9 569 aa22.62■■□□□ 1.21
USP40-207ENST00000450940 RALYLQ86SE5 291 aaKnown RBP22.62■■□□□ 1.21
USP40-207ENST00000450940 TLK2Q86UE8 772 aa22.62■■□□□ 1.21
USP40-207ENST00000450940 ESYT1Q9BSJ8 1104 aa22.62■■□□□ 1.21
USP40-207ENST00000450940 LSG1Q9H089 658 aaKnown RBP22.62■■□□□ 1.21
USP40-207ENST00000450940 ANTXR2P58335 489 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 FAAP100Q0VG06 881 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 GRM4Q14833 912 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 DUSP28Q4G0W2 176 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 GPR153Q6NV75 609 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 KIAA1211Q6ZU35 1233 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 NOL8Q76FK4 1167 aaKnown RBP22.61■■□□□ 1.21
USP40-207ENST00000450940 FBXO11Q86XK2 927 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 MB21D2Q8IYB1 491 aaPredicted RBP22.61■■□□□ 1.21
USP40-207ENST00000450940 IGDCC4Q8TDY8 1250 aa22.61■■□□□ 1.21
USP40-207ENST00000450940 PRDM5Q9NQX1 630 aaPredicted RBP22.61■■□□□ 1.21
USP40-207ENST00000450940 ERICH2A1L162 156 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 DYNC1LI2O43237 492 aaPredicted RBP22.6■■□□□ 1.21
USP40-207ENST00000450940 BEX3Q00994 111 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 TROAPQ12815 778 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 SART3Q15020 963 aaKnown RBP22.6■■□□□ 1.21
USP40-207ENST00000450940 FSCN1Q16658 493 aaKnown RBP22.6■■□□□ 1.21
USP40-207ENST00000450940 TMEM63BQ5T3F8 832 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 TBC1D5Q92609 795 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 LRCH3Q96II8 777 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 MPHOSPH6Q99547 160 aaKnown RBP22.6■■□□□ 1.21
USP40-207ENST00000450940 MTA3Q9BTC8 594 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 AP5M1Q9H0R1 490 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 SENP2Q9HC62 589 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 VAT1LQ9HCJ6 419 aa22.6■■□□□ 1.21
USP40-207ENST00000450940 MRPL11Q9Y3B7 192 aaKnown RBP22.6■■□□□ 1.21
USP40-207ENST00000450940 MROH7Q68CQ1 1323 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 DCDC2CA8MYV0 355 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 B4DLN1 442 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 ARVCFO00192 962 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 PQBP1O60828 265 aaKnown RBP22.59■■□□□ 1.21
USP40-207ENST00000450940 MRPL12P52815 198 aaKnown RBP22.59■■□□□ 1.21
USP40-207ENST00000450940 GHRHRQ02643 423 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 WTAPQ15007 396 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 MCF2L2Q86YR7 1114 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 SLC43A3Q8NBI5 491 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 BADQ92934 168 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 RIOX1Q9H6W3 641 aa22.59■■□□□ 1.21
USP40-207ENST00000450940 BAZ2BQ9UIF8 2168 aaKnown RBP22.58■■□□□ 1.21
USP40-207ENST00000450940 A0A0U1RQG5 324 aaPredicted RBP22.58■■□□□ 1.21
USP40-207ENST00000450940 DHX16O60231 1041 aaKnown RBP22.58■■□□□ 1.21
USP40-207ENST00000450940 CABYRO75952 493 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 PTGS1P23219 599 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 ITGB8P26012 769 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 PDE4DQ08499 809 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 NECTIN1Q15223 517 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 SLC35G1Q2M3R5 365 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 CHST3Q7LGC8 479 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 SYTL5Q8TDW5 730 aaPredicted RBP22.58■■□□□ 1.21
USP40-207ENST00000450940 AMNQ9BXJ7 453 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 WDR11Q9BZH6 1224 aa22.58■■□□□ 1.21
USP40-207ENST00000450940 KIAA1217Q5T5P2 1943 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 ZBTB5O15062 677 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 TMEM67Q5HYA8 995 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 SKAP1Q86WV1 359 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 SEZ6LQ9BYH1 1024 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 TMEM39AQ9NV64 488 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 COL20A1Q9P218 1284 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 TBX21Q9UL17 535 aa22.57■■□□□ 1.2
USP40-207ENST00000450940 OPLAHO14841 1288 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 ZEB2O60315 1214 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 PPP1R11O60927 126 aaPredicted RBP22.56■■□□□ 1.2
USP40-207ENST00000450940 CXCL17Q6UXB2 119 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 SAMD3Q8N6K7 520 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 NSUN6Q8TEA1 469 aaKnown RBP22.56■■□□□ 1.2
USP40-207ENST00000450940 VTI1AQ96AJ9 217 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 TAAR1Q96RJ0 339 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 IWS1Q96ST2 819 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 MAP3K14Q99558 947 aa22.56■■□□□ 1.2
USP40-207ENST00000450940 MAP3K20Q9NYL2 800 aaKnown RBP22.56■■□□□ 1.2
USP40-207ENST00000450940 SLC27A2O14975 620 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 NKRFO15226 690 aaKnown RBP eCLIP22.55■■□□□ 1.2
USP40-207ENST00000450940 HSD17B4P51659 736 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 FAM126BQ8IXS8 530 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 SCFD2Q8WU76 684 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 LY9Q9HBG7 655 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 LAMA2P24043 3122 aaKnown RBP22.55■■□□□ 1.2
USP40-207ENST00000450940 GRIN2DO15399 1336 aa22.55■■□□□ 1.2
USP40-207ENST00000450940 CYTH3O43739 400 aa22.54■■□□□ 1.2
USP40-207ENST00000450940 CD4P01730 458 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms