RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 TRIM66O15016 1216 aa17.58■□□□□ 0.41
SHANK1-204ENST00000391814 RNMTO43148 476 aaKnown RBP17.58■□□□□ 0.41
SHANK1-204ENST00000391814 NCF2P19878 526 aaPredicted RBP17.58■□□□□ 0.41
SHANK1-204ENST00000391814 SLC8A3P57103 927 aa17.58■□□□□ 0.41
SHANK1-204ENST00000391814 TPH2Q8IWU9 490 aa17.58■□□□□ 0.41
SHANK1-204ENST00000391814 DCLK2Q8N568 766 aa17.58■□□□□ 0.41
SHANK1-204ENST00000391814 SETDB2Q96T68 719 aa17.58■□□□□ 0.41
SHANK1-204ENST00000391814 ADGRL1O94910 1474 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 A0A1W2PQ27 194 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 A0A1W2PQ64 194 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 A0A1W2PQD8 194 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 PPP6R2O75170 966 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 PUM3Q15397 648 aaKnown RBP17.58■□□□□ 0.4
SHANK1-204ENST00000391814 HIPK4Q8NE63 616 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 PANX2Q96RD6 677 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 METTL22Q9BUU2 404 aaPredicted RBP17.58■□□□□ 0.4
SHANK1-204ENST00000391814 C19orf44Q9H6X5 657 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 KDM3AQ9Y4C1 1321 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 SRLQ86TD4 932 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 TRIM56Q9BRZ2 755 aaKnown RBP17.58■□□□□ 0.4
SHANK1-204ENST00000391814 GNGT2O14610 69 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 RASGRF2O14827 1237 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 TOM1L1O75674 476 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 NUGGCQ68CJ6 796 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 EIF2AQ9BY44 585 aaKnown RBP17.58■□□□□ 0.4
SHANK1-204ENST00000391814 PALMDQ9NP74 551 aa17.58■□□□□ 0.4
SHANK1-204ENST00000391814 PACSIN2Q9UNF0 486 aaPredicted RBP17.58■□□□□ 0.4
SHANK1-204ENST00000391814 DNAJC6O75061 913 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 TNNI1P19237 187 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 PDIA3P30101 505 aaKnown RBP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 KDRP35968 1356 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 HNRNPCP07910 306 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ECE1P42892 770 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 SCHIP1Q9P0W5 487 aaPredicted RBP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ECEL1O95672 775 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 CHGBP05060 677 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 RGS9BPQ6ZS82 235 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ZCRB1Q8TBF4 217 aaKnown RBP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 PRPF31Q8WWY3 499 aaKnown RBP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 FIS1Q9Y3D6 152 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ABCC4O15439 1325 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 RIMBP2O15034 1052 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 TRIM37O94972 964 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ADAM9Q13443 819 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 HDAC11Q96DB2 347 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 CFLARO15519 480 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 NDUFA10O95299 355 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ADD1P35611 737 aaKnown RBP17.57■□□□□ 0.4
SHANK1-204ENST00000391814 PCYT1AP49585 367 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 PBKQ96KB5 322 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 TRAIPQ9BWF2 469 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 MYO1EQ12965 1108 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 ZNF654Q8IZM8 581 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 HAUS2Q9NVX0 235 aa17.57■□□□□ 0.4
SHANK1-204ENST00000391814 SMCO2A6NFE2 343 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 SGO2Q562F6 1265 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 CFAP36Q96G28 342 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 DNMBPQ6XZF7 1577 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 PRPF6O94906 941 aaKnown RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 RAPH1Q70E73 1250 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 BLIDQ8IZY5 108 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 CEP19Q96LK0 163 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 IFT140Q96RY7 1462 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 MCF2P10911 925 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 MYCLP12524 364 aaPredicted RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 DR1Q01658 176 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 TRMT10CQ7L0Y3 403 aaKnown RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 FAM133AQ8N9E0 248 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 CCDC68Q9H2F9 335 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 AZI2Q9H6S1 392 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 ARMCX3Q9UH62 379 aaPredicted RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 ESYT2A0FGR8 921 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 RASSF10A6NK89 507 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 BTBD18B2RXH4 712 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 IRX1P78414 480 aaPredicted RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 HADHQ16836 314 aaKnown RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 C6orf118Q5T5N4 469 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 PLA2G4DQ86XP0 818 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 RFX6Q8HWS3 928 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 NBPF3Q9H094 633 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 NT5C3AQ9H0P0 336 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.56■□□□□ 0.4
SHANK1-204ENST00000391814 ORC6Q9Y5N6 252 aa17.56■□□□□ 0.4
SHANK1-204ENST00000391814 PPARAQ07869 468 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 NBPF9Q3BBW0 867 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 G3BP2Q9UN86 482 aaKnown RBP17.55■□□□□ 0.4
SHANK1-204ENST00000391814 LMNB1P20700 586 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 EIF4A3P38919 411 aaKnown RBP17.55■□□□□ 0.4
SHANK1-204ENST00000391814 NEK9Q8TD19 979 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 NLRP3Q96P20 1036 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 EYA1Q99502 592 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 DNAJC17Q9NVM6 304 aaKnown RBP17.55■□□□□ 0.4
SHANK1-204ENST00000391814 DCTN3O75935 186 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 GPKOWQ92917 476 aaPredicted RBP eCLIP17.55■□□□□ 0.4
SHANK1-204ENST00000391814 FMO2Q99518 471 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 EXOC3L4Q17RC7 722 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 TRIM42Q8IWZ5 723 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 RAD23BP54727 409 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 MYL7Q01449 175 aa17.55■□□□□ 0.4
SHANK1-204ENST00000391814 HP1BP3Q5SSJ5 553 aaPredicted RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms