RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 SMCO2A6NFE2 343 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 SRGAP2O75044 1071 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 MCM6Q14566 821 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 JAKMIP3Q5VZ66 844 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 CSGALNACT2Q8N6G5 542 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 CEP112Q8N8E3 955 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 DAGLBQ8NCG7 672 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 OR8K1Q8NGG5 319 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 EYA3Q99504 573 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 ABCB6Q9NP58 842 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 LUC7L2Q9Y383 392 aaKnown RBP16.69■□□□□ 0.26
CLN3-253ENST00000636977 ROBO3Q96MS0 1386 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 VSNL1P62760 191 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 AMPD2Q01433 879 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 PDE4DQ08499 809 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 KCNB1Q14721 858 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 BEND6Q5SZJ8 279 aaPredicted RBP16.69■□□□□ 0.26
CLN3-253ENST00000636977 CCDC148Q8NFR7 591 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 C8orf37Q96NL8 207 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 PIGSQ96S52 555 aa16.69■□□□□ 0.26
CLN3-253ENST00000636977 CCDC151A5D8V7 595 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 PSMA7O14818 248 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 ERCC3P19447 782 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 GNAQP50148 359 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 GPSM2P81274 684 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 SNED1Q8TER0 1413 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 DNAJC7Q99615 494 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 TUBGCP2Q9BSJ2 902 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 MMTAG2Q9BU76 263 aaKnown RBP16.68■□□□□ 0.26
CLN3-253ENST00000636977 TRIM9Q9C026 710 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 ZMYND12Q9H0C1 365 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 ATP8B1O43520 1251 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 BAG3O95817 575 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 TRIM14Q14142 442 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 CLEC10AQ8IUN9 316 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 CEP95Q96GE4 821 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 TCP11L1Q9NUJ3 509 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 DUSP10Q9Y6W6 482 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 OR52Z1P0C646 297 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 ASIC1P78348 528 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 GRAPQ13588 217 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 POTEDQ86YR6 584 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 GRAPLQ8TC17 118 aaPredicted RBP16.68■□□□□ 0.26
CLN3-253ENST00000636977 THAP9Q9H5L6 903 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 MYO6Q9UM54 1294 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 CAPN11Q9UMQ6 739 aa16.68■□□□□ 0.26
CLN3-253ENST00000636977 FRMPD2Q68DX3 1309 aaPredicted RBP16.67■□□□□ 0.26
CLN3-253ENST00000636977 USP17L5A8MUK1 530 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 N4BP1O75113 896 aaKnown RBP16.67■□□□□ 0.26
CLN3-253ENST00000636977 ATP1A1P05023 1023 aaKnown RBP16.67■□□□□ 0.26
CLN3-253ENST00000636977 PPP4CP60510 307 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 RC3H1Q5TC82 1133 aaKnown RBP16.67■□□□□ 0.26
CLN3-253ENST00000636977 TBCKQ8TEA7 893 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 LACRTQ9GZZ8 138 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 COL24A1Q17RW2 1714 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 MAP2K7O14733 419 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 EEF1GP26641 437 aaKnown RBP16.67■□□□□ 0.26
CLN3-253ENST00000636977 SLC20A2Q08357 652 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 MSANTD4Q8NCY6 345 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 PDE11AQ9HCR9 933 aa16.67■□□□□ 0.26
CLN3-253ENST00000636977 TXKP42681 527 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 EIF6P56537 245 aaKnown RBP16.66■□□□□ 0.26
CLN3-253ENST00000636977 CYP27A1Q02318 531 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 BRD3Q15059 726 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 NONOQ15233 471 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLN3-253ENST00000636977 AMOTL1Q8IY63 956 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 TEX11Q8IYF3 940 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 P2RX5Q93086 422 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 CNOT6LQ96LI5 555 aaKnown RBP16.66■□□□□ 0.26
CLN3-253ENST00000636977 SLC39A2Q9NP94 309 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 MAGEC2Q9UBF1 373 aaPredicted RBP16.66■□□□□ 0.26
CLN3-253ENST00000636977 RAB21Q9UL25 225 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 CTAGE15A4D2H0 777 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 CTAGE8P0CG41 777 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 SRGNP10124 158 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 TBC1D8BQ0IIM8 1120 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 MIIPQ5JXC2 388 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 CTAGE6Q86UF2 777 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 CTAGE4Q8IX94 777 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 KIAA0895Q8NCT3 520 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 TTYH3Q9C0H2 523 aa16.66■□□□□ 0.26
CLN3-253ENST00000636977 A0A1W2PQC6 194 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 PLEKP08567 350 aaPredicted RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 STIM1Q13586 685 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 CCDC122Q5T0U0 273 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 GJA10Q969M2 543 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 COA7Q96BR5 231 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 UIMC1Q96RL1 719 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 CD209Q9NNX6 404 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 EXOC1Q9NV70 894 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 LEMD3Q9Y2U8 911 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 GOLGB1Q14789 3259 aaKnown RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 NAV1Q8NEY1 1877 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 EDIL3O43854 480 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 UFL1O94874 794 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 TRIM21P19474 475 aaKnown RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 RFC4P35249 363 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 PRPHP41219 470 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 GSTO1P78417 241 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 C16orf86Q6ZW13 317 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms