RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 STARD7Q9NQZ5 370 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 HOMER2Q9NSB8 354 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 RNF146Q9NTX7 359 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 FBXO40Q9UH90 709 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 PRR12Q9ULL5 1215 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 GNEQ9Y223 722 aaKnown RBP7.98□□□□□ -1.13
VPS53-213ENST00000572334 GRIN2DO15399 1336 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 ELP1O95163 1332 aa7.98□□□□□ -1.13
VPS53-213ENST00000572334 BAZ2BQ9UIF8 2168 aaKnown RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 TIMP1P01033 207 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 CD4P01730 458 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 FGAP02671 866 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 C6orf222P0C671 652 aaPredicted RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 FDX1P10109 184 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 RAG1P15918 1043 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 SLC1A4P43007 532 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 BEX3Q00994 111 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 HDAC1Q13547 482 aaPredicted RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 LRRFIP1Q32MZ4 808 aaKnown RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 ZNF697Q5TEC3 545 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 ANKRD45Q5TZF3 282 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 RASIP1Q5U651 963 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 ERICH6BQ5W0A0 696 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 RCSD1Q6JBY9 416 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 TAPT1Q6NXT6 567 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 BTNL9Q6UXG8 535 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 FAM160B2Q86V87 743 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 SLC43A3Q8NBI5 491 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 MORC4Q8TE76 937 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 CHURC1Q8WUH1 139 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 TRERF1Q96PN7 1200 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.97□□□□□ -1.134e-8■■□□□ 12.6
VPS53-213ENST00000572334 COL25A1Q9BXS0 654 aaPredicted RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 RANBP17Q9H2T7 1088 aaKnown RBP7.97□□□□□ -1.13
VPS53-213ENST00000572334 PDGFCQ9NRA1 345 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 TMEM39AQ9NV64 488 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 CYP39A1Q9NYL5 469 aa7.97□□□□□ -1.13
VPS53-213ENST00000572334 TSPY2A6NKD2 308 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 ARVCFO00192 962 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 HSPD1P10809 573 aaKnown RBP7.96□□□□□ -1.14
VPS53-213ENST00000572334 ALAS1P13196 640 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 SMPD1P17405 629 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 FPGSQ05932 587 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 TKFCQ3LXA3 575 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 TMEM240Q5SV17 173 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 MFSD5Q6N075 450 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 CCDC174Q6PII3 467 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS53-213ENST00000572334 NUP133Q8WUM0 1156 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 MYLIPQ8WY64 445 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 EVI5LQ96CN4 794 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 RNPC3Q96LT9 517 aaKnown RBP7.96□□□□□ -1.14
VPS53-213ENST00000572334 TMEM47Q9BQJ4 181 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 HELLSQ9NRZ9 838 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 TCP11L1Q9NUJ3 509 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 STX8Q9UNK0 236 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 ZMYM6O95789 1325 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 TANC1Q9C0D5 1861 aa7.96□□□□□ -1.14
VPS53-213ENST00000572334 A0A0U1RQG5 324 aaPredicted RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 DCDC2CA8MYV0 355 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 NFIBO00712 420 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 RANBP6O60518 1105 aaKnown RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 ICAM1P05362 532 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 SLC3A2P08195 630 aaKnown RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 SNHG28P0DPA3 235 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 CSF2RAP15509 400 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 SLC16A2P36021 539 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 TNFAIP2Q03169 654 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 NMIQ13287 307 aaPredicted RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 GRIN2CQ14957 1233 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 MCMDC2Q4G0Z9 681 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 GNASQ5JWF2 1037 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 CXCL17Q6UXB2 119 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 TBC1D10CQ8IV04 446 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 FBXO16Q8IX29 292 aaPredicted RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 PCSK9Q8NBP7 692 aaKnown RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 DCAF4Q8WV16 495 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 CLEC4DQ8WXI8 215 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 GLT1D1Q96MS3 346 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 CTDP1Q9Y5B0 961 aaPredicted RBP7.95□□□□□ -1.14
VPS53-213ENST00000572334 UMODL1Q5DID0 1318 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 TRANK1O15050 2925 aa7.95□□□□□ -1.14
VPS53-213ENST00000572334 PRRC2BQ5JSZ5 2229 aaKnown RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 BRWD1Q9NSI6 2320 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 TMEM265A0A087WTH1 108 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 RBM47A0AV96 593 aaKnown RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 ASB14A6NK59 587 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 GRXCR1A8MXD5 290 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 IGHDP01880 384 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 ACRP10323 421 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 PDHBP11177 359 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 TOP1P11387 765 aaKnown RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 DNAJB2P25686 324 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 CYP2C18P33260 490 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 PBX2P40425 430 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 HAND2P61296 217 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 BAATQ14032 418 aaPredicted RBP7.94□□□□□ -1.14
VPS53-213ENST00000572334 SYDE2Q5VT97 1194 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 EEPD1Q7L9B9 569 aa7.94□□□□□ -1.14
VPS53-213ENST00000572334 TLK2Q86UE8 772 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms