RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 NUP133Q8WUM0 1156 aa13.69□□□□□ -0.22
PRPF40B-212ENST00000551111 VTI1AQ96AJ9 217 aa13.69□□□□□ -0.22
PRPF40B-212ENST00000551111 RNPC3Q96LT9 517 aaKnown RBP13.69□□□□□ -0.22
PRPF40B-212ENST00000551111 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.69□□□□□ -0.22
PRPF40B-212ENST00000551111 COL25A1Q9BXS0 654 aaPredicted RBP13.69□□□□□ -0.22
PRPF40B-212ENST00000551111 GRIN2DO15399 1336 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 REV3LO60673 3130 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 GRXCR1A8MXD5 290 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 RBAK-RBAKDNI3L0D1 243 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 PLA2G6O60733 806 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 TIMP1P01033 207 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 FGRP09769 529 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 ACRP10323 421 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 SMPD1P17405 629 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 HAND2P61296 217 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 TNFAIP2Q03169 654 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 FPGSQ05932 587 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 NMIQ13287 307 aaPredicted RBP13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 ALX1Q15699 326 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 RRP12Q5JTH9 1297 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 TAPT1Q6NXT6 567 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 CXCL17Q6UXB2 119 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 FAM126BQ8IXS8 530 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 EVI5LQ96CN4 794 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 GLT1D1Q96MS3 346 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 CYP39A1Q9NYL5 469 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 GNEQ9Y223 722 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 MYH7BA7E2Y1 1941 aa13.68□□□□□ -0.22
PRPF40B-212ENST00000551111 ELP1O95163 1332 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 UMODL1Q5DID0 1318 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 FRMPD2Q68DX3 1309 aaPredicted RBP13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 SPTBN5Q9NRC6 3674 aaKnown RBP13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 LAMA4Q16363 1823 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 ARVCFO00192 962 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 NFIBO00712 420 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 ORC4O43929 436 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 FDX1P10109 184 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 HSPD1P10809 573 aaKnown RBP13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 CSF2RAP15509 400 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 PBX2P40425 430 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 CCDC96Q2M329 555 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 TMEM240Q5SV17 173 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 NSMFQ6X4W1 530 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 FBXO16Q8IX29 292 aaPredicted RBP13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 TMEM47Q9BQJ4 181 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 PPP1R12CQ9BZL4 782 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 LNPKQ9C0E8 428 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 GPCPD1Q9NPB8 672 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 TET1Q8NFU7 2136 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 CHD7Q9P2D1 2997 aa13.67□□□□□ -0.22
PRPF40B-212ENST00000551111 DYNC1LI2O43237 492 aaPredicted RBP13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 CD4P01730 458 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 CYP2C18P33260 490 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 NKX3-2P78367 333 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 HDAC1Q13547 482 aaPredicted RBP13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 GRIN2CQ14957 1233 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 NOL8Q76FK4 1167 aaKnown RBP13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 TLK2Q86UE8 772 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 PCSK9Q8NBP7 692 aaKnown RBP13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 PPP1R13LQ8WUF5 828 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 RANBP17Q9H2T7 1088 aaKnown RBP13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 HELLSQ9NRZ9 838 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 TOMM22Q9NS69 142 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 CCPG1Q9ULG6 757 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 KIAA1217Q5T5P2 1943 aa13.66□□□□□ -0.22
PRPF40B-212ENST00000551111 BAZ2BQ9UIF8 2168 aaKnown RBP13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 A0A0U1RQG5 324 aaPredicted RBP13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 ICAM1P05362 532 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 PSMC6P62333 389 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 BAATQ14032 418 aaPredicted RBP13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 TKFCQ3LXA3 575 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 MCMDC2Q4G0Z9 681 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 B4GALNT3Q6L9W6 998 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 MFSD5Q6N075 450 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 BTNL9Q6UXG8 535 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 TBC1D10CQ8IV04 446 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 SLC43A3Q8NBI5 491 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 MAFAQ8NHW3 353 aaPredicted RBP13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 DCAF4Q8WV16 495 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 VWCEQ96DN2 955 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 CPVLQ9H3G5 476 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 SCN10AQ9Y5Y9 1956 aa13.65□□□□□ -0.22
PRPF40B-212ENST00000551111 ASB14A6NK59 587 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 IGHDP01880 384 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 DNAJB2P25686 324 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 FSCN1Q16658 493 aaKnown RBP13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 RASIP1Q5U651 963 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 SYDE2Q5VT97 1194 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 ZNF365Q70YC5 407 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 USP38Q8NB14 1042 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 CLEC4DQ8WXI8 215 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 ZKSCAN3Q9BRR0 538 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 TRPV6Q9H1D0 765 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 SPC25Q9HBM1 224 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 CXXC1Q9P0U4 656 aaPredicted RBP13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 NEDD4P46934 1319 aa13.64□□□□□ -0.23
PRPF40B-212ENST00000551111 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.63□□□□□ -0.23
PRPF40B-212ENST00000551111 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.63□□□□□ -0.23
PRPF40B-212ENST00000551111 TRIM6-TRIM34B2RNG4 842 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms