RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 IQCF3P0C7M6 154 aa16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 ERVK-21P61565 698 aa16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 NUP88Q99567 741 aaPredicted RBP16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 FTOQ9C0B1 505 aaKnown RBP eCLIP16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 KANSL2Q9H9L4 492 aa16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 PRKAG3Q9UGI9 489 aa16.76■□□□□ 0.27
NKX3-1-202ENST00000523261 SIP14410 1827 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 E9PSI1 815 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 H3BQ06 376 aaPredicted RBP16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 PITPNM1O00562 1244 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 CDK8P49336 464 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 TMEM63BQ5T3F8 832 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 TMCO2Q7Z6W1 182 aaPredicted RBP16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 FAM133AQ8N9E0 248 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 TGS1Q96RS0 853 aaKnown RBP16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 RAVER2Q9HCJ3 691 aaKnown RBP16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 FBXO40Q9UH90 709 aa16.75■□□□□ 0.27
NKX3-1-202ENST00000523261 IRS1P35568 1242 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 KCNJ6P48051 423 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 WDR5P61964 334 aaKnown RBP16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 IER5LQ5T953 404 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 PRPF38AQ8NAV1 312 aaKnown RBP16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 CHST13Q8NET6 341 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 PDGFCQ9NRA1 345 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 Q9Y3F1 56 aa16.74■□□□□ 0.27
NKX3-1-202ENST00000523261 PTPRZ1P23471 2315 aaPredicted RBP16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 LINC01553A4QN01 128 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 SOWAHBA6NEL2 793 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 GFRA3O60609 400 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 ZBED4O75132 1171 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 GNAI2P04899 355 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 TCF15Q12870 199 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 TAPT1Q6NXT6 567 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 ADHFE1Q8IWW8 467 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 ZBED2Q9BTP6 218 aa16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 UPF3BQ9BZI7 483 aaKnown RBP16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 CCDC8Q9H0W5 538 aaPredicted RBP16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 DDX49Q9Y6V7 483 aaKnown RBP16.73■□□□□ 0.27
NKX3-1-202ENST00000523261 PDE6AP16499 860 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 DEFB103AP81534 67 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 OS9Q13438 667 aaPredicted RBP16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 HERC4Q5GLZ8 1057 aaPredicted RBP16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 IQSEC1Q6DN90 963 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 LCORLQ8N3X6 602 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 RETREG2Q8NC44 543 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 SLC38A10Q9HBR0 1119 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 FAM50BQ9Y247 325 aa16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 BAZ2AQ9UIF9 1905 aaKnown RBP16.72■□□□□ 0.27
NKX3-1-202ENST00000523261 SCN10AQ9Y5Y9 1956 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 C5orf42Q9H799 3197 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 CYP2D7A0A087X1C5 515 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 ASB14A6NK59 587 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 GJB5O95377 273 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 PURAQ00577 322 aaKnown RBP16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 SLFN5Q08AF3 891 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 POLA2Q14181 598 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 C16orf86Q6ZW13 317 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 BMP8AQ7Z5Y6 402 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 EAF2Q96CJ1 260 aaPredicted RBP16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 RAD9AQ99638 391 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 POLR3EQ9NVU0 708 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 MUTYHQ9UIF7 546 aa16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 CTDP1Q9Y5B0 961 aaPredicted RBP16.71■□□□□ 0.27
NKX3-1-202ENST00000523261 GREB1LQ9C091 1923 aaPredicted RBP16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 NDUFB10O96000 172 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 SLC9C2Q5TAH2 1124 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 C12orf60Q5U649 245 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 FBXO16Q8IX29 292 aaPredicted RBP16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 KIFC2Q96AC6 838 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 MRPL38Q96DV4 380 aaKnown RBP16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 PRRX2Q99811 253 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 HOMER2Q9NSB8 354 aa16.7■□□□□ 0.26
NKX3-1-202ENST00000523261 F5H6K3 240 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 OAZ1P54368 228 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 KLRC3Q07444 240 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 BFSP2Q13515 415 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 GPNMBQ14956 572 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 COL19A1Q14993 1142 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 NBPF20Q3BBV1 942 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 FAM47CQ5HY64 1035 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 EEPD1Q7L9B9 569 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 PPP1R13LQ8WUF5 828 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 PABPC5Q96DU9 382 aaKnown RBP16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 A1CFQ9NQ94 594 aaKnown RBP16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 FAM86C1Q9NVL1 165 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 TRIP12Q14669 1992 aaPredicted RBP16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 ZNF532Q9HCE3 1301 aa16.69■□□□□ 0.26
NKX3-1-202ENST00000523261 TCRBV5S4A2TA0A5A2 114 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 PRKAB2O43741 272 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 MYL3P08590 195 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 FAM9BQ8IZU0 186 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 FBXO22Q8NEZ5 403 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 SSH3Q8TE77 659 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 EDAQ92838 391 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 MTG1Q9BT17 334 aaPredicted RBP16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 ACAD9Q9H845 621 aa16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 ARMT1Q9H993 441 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms