RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 CTNNA3Q9UI47 895 aa10.6□□□□□ -0.71
USF1-204ENST00000472217 DDX49Q9Y6V7 483 aaKnown RBP10.6□□□□□ -0.71
USF1-204ENST00000472217 RAD50Q92878 1312 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 ASB14A6NK59 587 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 NFIBO00712 420 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 DUSP11O75319 330 aaKnown RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 CHMLP26374 656 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 ACLYP53396 1101 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 CCDC178Q5BJE1 867 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 CCSAPQ6IQ19 270 aaPredicted RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 ENAHQ8N8S7 591 aaPredicted RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 PNMA1Q8ND90 353 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 KLHDC9Q8NEP7 349 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 LRCH3Q96II8 777 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 PURBQ96QR8 312 aaKnown RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 ZSCAN10Q96SZ4 725 aaPredicted RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 LBHD1Q9BQE6 289 aaPredicted RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 TSEN34Q9BSV6 310 aaKnown RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 UPF3AQ9H1J1 476 aaKnown RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 CNNM2Q9H8M5 875 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 PRDM5Q9NQX1 630 aaPredicted RBP10.59□□□□□ -0.71
USF1-204ENST00000472217 PDLIM7Q9NR12 457 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 ZSWIM5Q9P217 1185 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 PRKAG2Q9UGJ0 569 aa10.59□□□□□ -0.71
USF1-204ENST00000472217 TNKSO95271 1327 aa10.58□□□□□ -0.71
USF1-204ENST00000472217 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.58□□□□□ -0.72
USF1-204ENST00000472217 C6orf222P0C671 652 aaPredicted RBP10.58□□□□□ -0.72
USF1-204ENST00000472217 GOLGA8HP0CJ92 632 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 CST5P28325 142 aaPredicted RBP10.58□□□□□ -0.72
USF1-204ENST00000472217 TLE2Q04725 743 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 KCNA10Q16322 511 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 GPATCH4Q5T3I0 446 aaKnown RBP10.58□□□□□ -0.72
USF1-204ENST00000472217 SH3RF1Q7Z6J0 888 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 RUFY2Q8WXA3 655 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 CLEC4DQ8WXI8 215 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 ANKS1AQ92625 1134 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 KRT23Q9C075 422 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 CPVLQ9H3G5 476 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 KAT14Q9H8E8 782 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 WDR19Q8NEZ3 1342 aa10.58□□□□□ -0.72
USF1-204ENST00000472217 PTPDC1A2A3K4 754 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 MOXD2PA6NHM9 499 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 CTAGE5O15320 804 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 GJA9P57773 515 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 TNFAIP2Q03169 654 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 PTH1RQ03431 593 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 BAATQ14032 418 aaPredicted RBP10.57□□□□□ -0.72
USF1-204ENST00000472217 LRIT3Q3SXY7 679 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 SLC30A10Q6XR72 485 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 EEPD1Q7L9B9 569 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 FBXO16Q8IX29 292 aaPredicted RBP10.57□□□□□ -0.72
USF1-204ENST00000472217 MORC4Q8TE76 937 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 UBAC1Q9BSL1 405 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 UBA5Q9GZZ9 404 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 SPC25Q9HBM1 224 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 STARD7Q9NQZ5 370 aa10.57□□□□□ -0.72
USF1-204ENST00000472217 TRIM43BA6NCK2 446 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 SGSM2O43147 1006 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 PQBP1O60828 265 aaKnown RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 ASGR1P07306 291 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 CYP21A2P08686 494 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 CLTBP09497 229 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 PTGS1P23219 599 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 ALDH5A1P51649 535 aaPredicted RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 CDC37Q16543 378 aaPredicted RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 USH1GQ495M9 461 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 ASPRV1Q53RT3 343 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 TMEM63BQ5T3F8 832 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 TAPT1Q6NXT6 567 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 NOL8Q76FK4 1167 aaKnown RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 CYB5R4Q7L1T6 521 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 TLK2Q86UE8 772 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 PCSK9Q8NBP7 692 aaKnown RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 NUP133Q8WUM0 1156 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 BADQ92934 168 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 TRIM43Q96BQ3 446 aaPredicted RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 PDGFCQ9NRA1 345 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 ADD3Q9UEY8 706 aaKnown RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 PNMA2Q9UL42 364 aa10.56□□□□□ -0.72
USF1-204ENST00000472217 RANBP2P49792 3224 aaKnown RBP10.56□□□□□ -0.72
USF1-204ENST00000472217 PARP1P09874 1014 aaKnown RBP10.55□□□□□ -0.72
USF1-204ENST00000472217 SMPD1P17405 629 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 ITGB8P26012 769 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 CALML3P27482 149 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 RPS6P62753 249 aaKnown RBP10.55□□□□□ -0.72
USF1-204ENST00000472217 NKX3-2P78367 333 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 BEX3Q00994 111 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 SEC23AQ15436 765 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 GNASQ5JWF2 1037 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 IFIT1BQ5T764 474 aaKnown RBP10.55□□□□□ -0.72
USF1-204ENST00000472217 RNF207Q6ZRF8 634 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 ANKRD33Q7Z3H0 272 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 ADGRF4Q8IZF3 695 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 GLT1D1Q96MS3 346 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 VTA1Q9NP79 307 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 GNEQ9Y223 722 aaKnown RBP10.55□□□□□ -0.72
USF1-204ENST00000472217 TAF6LQ9Y6J9 622 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 U3KPZ7 1027 aaPredicted RBP10.55□□□□□ -0.72
USF1-204ENST00000472217 ELP1O95163 1332 aa10.55□□□□□ -0.72
USF1-204ENST00000472217 LOC102724159A0A0B4J2E5 919 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms