RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ZBED6P86452 979 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 MIIPQ5JXC2 388 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 SRLQ86TD4 932 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 TXNRD3Q86VQ6 643 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 BBXQ8WY36 941 aaPredicted RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 P2RX5Q93086 422 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 EIF3CQ99613 913 aaKnown RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 MKRN1Q9UHC7 482 aaKnown RBP14.21□□□□□ -0.13
SHMT1-205ENST00000395684 MTMR7Q9Y216 660 aa14.21□□□□□ -0.13
SHMT1-205ENST00000395684 STXBP3O00186 592 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 ZNF263O14978 683 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 RNF40O75150 1001 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 RPS6KA5O75582 802 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 MYBL2P10244 700 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 FCER1AP12319 257 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 CCNE1P24864 410 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 TXNRD1Q16881 649 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 C12orf60Q5U649 245 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 CLEC4GQ6UXB4 293 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 DAGLBQ8NCG7 672 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 NOC3LQ8WTT2 800 aaKnown RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 ANKS1AQ92625 1134 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 ZFP91Q96JP5 570 aaPredicted RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 CNOT6LQ96LI5 555 aaKnown RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 NUP58Q9BVL2 599 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 TRIM9Q9C026 710 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 BARHL2Q9NY43 387 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 HPCAL4Q9UM19 191 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 PRPF6O94906 941 aaKnown RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 TNNT3P45378 269 aaPredicted RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 PDE4DQ08499 809 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 SMIM5Q71RC9 77 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC170Q8IYT3 715 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 MARCH10Q8NA82 808 aaPredicted RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 RETREG2Q8NC44 543 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 EHBP1Q8NDI1 1231 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 PURBQ96QR8 312 aaKnown RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 ACBD3Q9H3P7 528 aa14.2□□□□□ -0.14
SHMT1-205ENST00000395684 ZNHIT6Q9NWK9 470 aaKnown RBP14.2□□□□□ -0.14
SHMT1-205ENST00000395684 MACROD2A1Z1Q3 448 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 TARSL2A2RTX5 802 aaKnown RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 PRPHP41219 470 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 RPS8P62241 208 aaKnown RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 DDB1Q16531 1140 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 CCDC178Q5BJE1 867 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 KRT26Q7Z3Y9 468 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 CABP7Q86V35 215 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 GSPT2Q8IYD1 628 aaKnown RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 RIN2Q8WYP3 895 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 HPS3Q969F9 1004 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 TSPYL1Q9H0U9 437 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 RRP15Q9Y3B9 282 aaKnown RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 RREB1Q92766 1687 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 KIAA1551Q9HCM1 1747 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 PLEKP08567 350 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 SEMA3FQ13275 785 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 LRRC31Q6UY01 552 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 C10orf67Q8IYJ2 551 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 COG1Q8WTW3 980 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 RPGRIP1Q96KN7 1286 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 PCMTD1Q96MG8 357 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 NOC4LQ9BVI4 516 aaKnown RBP14.19□□□□□ -0.14
SHMT1-205ENST00000395684 CPVLQ9H3G5 476 aa14.19□□□□□ -0.14
SHMT1-205ENST00000395684 LAD1O00515 517 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 IVLP07476 585 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 GOLGA8HP0CJ92 632 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 IDEP14735 1019 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 MCM3P25205 808 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 MTIF2P46199 727 aaKnown RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 GNAQP50148 359 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 CKAP4Q07065 602 aaKnown RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 ZSCAN29Q8IWY8 852 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 SMCR8Q8TEV9 937 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 HINFPQ9BQA5 517 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 JADE2Q9NQC1 790 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 LAMB1P07942 1786 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 IPO7O95373 1038 aaKnown RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 MAP9Q49MG5 647 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 GALNT17Q6IS24 598 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 CCNI2Q6ZMN8 369 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 SLC44A5Q8NCS7 719 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 C7orf25Q9BPX7 421 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 CUEDC2Q9H467 287 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 MKNK2Q9HBH9 465 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 TCP11L1Q9NUJ3 509 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 LRWD1Q9UFC0 647 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 ANO9A1A5B4 782 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 BICDL2A1A5D9 508 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 PALM3A6NDB9 673 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 NUTM2BA6NNL0 878 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 NUTM2EB1AL46 878 aaPredicted RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 CCNT1O60563 726 aaKnown RBP14.18□□□□□ -0.14
SHMT1-205ENST00000395684 VAV2P52735 878 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 ASIC1P78348 528 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 C2orf54Q08AI8 447 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 KIF5AQ12840 1032 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 LETM2Q2VYF4 491 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 SLC10A5Q5PT55 438 aa14.18□□□□□ -0.14
SHMT1-205ENST00000395684 KIAA0895Q8NCT3 520 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms