RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 USP40Q9NVE5 1235 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 ADGRG1Q9Y653 693 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 CASQ1P31415 396 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 EIF6P56537 245 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 FBXO38Q6PIJ6 1188 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 CREBRFQ8IUR6 639 aa23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 SRRTQ9BXP5 876 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-203ENST00000359902 TECP42680 631 aa23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 ORC2Q13416 577 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 DOK7Q18PE1 504 aa23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 CLEC10AQ8IUN9 316 aa23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 SERPINB13Q9UIV8 391 aa23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 COA7Q96BR5 231 aa23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 MMTAG2Q9BU76 263 aaKnown RBP23.42■■□□□ 1.34
CCDC88B-203ENST00000359902 RNF225M0QZC1 329 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 TPM1P09493 284 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 NPR1P16066 1061 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 KIFC2Q96AC6 838 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 TTLL1O95922 423 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 SCNN1DP51172 638 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 STIM1Q13586 685 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 POTEDQ86YR6 584 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 TRIM9Q9C026 710 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 GPCPD1Q9NPB8 672 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 SWAP70Q9UH65 585 aa23.41■■□□□ 1.34
CCDC88B-203ENST00000359902 MAP3K9P80192 1104 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 CDC42EP5Q6NZY7 148 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 NLGN1Q8N2Q7 840 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 MTMR9Q96QG7 549 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 C7orf25Q9BPX7 421 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 DDX41Q9UJV9 622 aaKnown RBP23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 QSER1Q2KHR3 1735 aa23.4■■□□□ 1.34
CCDC88B-203ENST00000359902 PSMA7O14818 248 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 EDIL3O43854 480 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 SHMT1P34896 483 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 UBXN1Q04323 297 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 THAP9Q9H5L6 903 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 OGFRQ9NZT2 677 aa23.39■■□□□ 1.34
CCDC88B-203ENST00000359902 ADCY7P51828 1080 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 ZNF543Q08ER8 600 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 TRIM14Q14142 442 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 TTI2Q6NXR4 508 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 DHTKD1Q96HY7 919 aaPredicted RBP23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 CARD6Q9BX69 1037 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 ABHD10Q9NUJ1 306 aa23.39■■□□□ 1.33
CCDC88B-203ENST00000359902 TXKP42681 527 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 APOBEC3HQ6NTF7 200 aaKnown RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 HHIPL2Q6UWX4 724 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 JMJD4Q9H9V9 463 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 MYO3BQ8WXR4 1341 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 BRWD3Q6RI45 1802 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 A0A0U1RQJ8 604 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 H2AFXP16104 143 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 EEF1GP26641 437 aaKnown RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 ALDH1B1P30837 517 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 COL23A1Q86Y22 540 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 TMTC1Q8IUR5 882 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 MNS1Q8NEH6 495 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 ATRIPQ8WXE1 791 aa23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 NUP88Q99567 741 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 IRX2Q9BZI1 471 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-203ENST00000359902 TADA3O75528 432 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 ERVK-24P63145 666 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 ADGRF4Q8IZF3 695 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 TRIM47Q96LD4 638 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 DUSP9Q99956 384 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 LZTFL1Q9NQ48 299 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 PNMA6FA0A0J9YX94 578 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 PDE4DQ08499 809 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 CALCRLQ16602 461 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 ARHGAP29Q52LW3 1261 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 MB21D1Q8N884 522 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 ZNF507Q8TCN5 953 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 UBXN4Q92575 508 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 TEKT1Q969V4 418 aa23.37■■□□□ 1.33
CCDC88B-203ENST00000359902 MYH8P13535 1937 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 LGALS16A8MUM7 142 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 STK4Q13043 487 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 TTBK2Q6IQ55 1244 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 CCDC47Q96A33 483 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 CALML4Q96GE6 196 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 EXOC1Q9NV70 894 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 MRFAP1Q9Y605 127 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 SLC37A4O43826 429 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 PPP1R11O60927 126 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 HMGB2P26583 209 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 FXR2P51116 673 aaKnown RBP eCLIP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 ASIC1P78348 528 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 AMPD3Q01432 767 aa23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 SMAP1Q8IYB5 467 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 NOC3LQ8WTT2 800 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-203ENST00000359902 NRXN2Q9P2S2 1712 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 EFCAB8A8MWE9 144 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 TDP2O95551 362 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 KRT9P35527 623 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 NFIAQ12857 509 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 GRB10Q13322 594 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 RIC8AQ9NPQ8 531 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 LRWD1Q9UFC0 647 aa23.35■■□□□ 1.33
CCDC88B-203ENST00000359902 C10orf71Q711Q0 1435 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms