RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 PI16Q6UXB8 463 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 LMNTD2Q8IXW0 634 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 C17orf53Q8N3J3 647 aaPredicted RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 FAM151AQ8WW52 585 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 MBD4O95243 580 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 CYP2E1P05181 493 aaPredicted RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 OAS2P29728 719 aaKnown RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 FAM83AQ86UY5 434 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 TGFBRAP1Q8WUH2 860 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 PRMT6Q96LA8 375 aaPredicted RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 CSRNP1Q96S65 589 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 C6orf50Q9HD87 102 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 MCM9Q9NXL9 1143 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 EP400Q96L91 3159 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 CERS5Q8N5B7 392 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 CCDC110Q8TBZ0 833 aa13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 LEO1Q8WVC0 666 aaPredicted RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 NSUN4Q96CB9 384 aaKnown RBP13.17□□□□□ -0.3
SYNGAP1-201ENST00000293748 DTHD1Q6ZMT9 781 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 SLC51AQ86UW1 340 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 IFT20Q8IY31 132 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 CFAP57Q96MR6 1250 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 GMLQ99445 158 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 PIH1D3Q9NQM4 214 aaKnown RBP13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 TMEM63CQ9P1W3 806 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 KIF3CO14782 793 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 BRD1O95696 1058 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 ATP11AP98196 1134 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 BRD3Q15059 726 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 ANO1Q5XXA6 986 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 HS2ST1Q7LGA3 356 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 KIAA1524Q8TCG1 905 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 UBLCP1Q8WVY7 318 aaPredicted RBP13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 KCNK9Q9NPC2 374 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 DUOX1Q9NRD9 1551 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 GOLGA6BA6NDN3 693 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 TBC1D8BQ0IIM8 1120 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 VWA3BQ502W6 1294 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 HEATR3Q7Z4Q2 680 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 CDCA5Q96FF9 252 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 AS3MTQ9HBK9 375 aa13.16□□□□□ -0.3
SYNGAP1-201ENST00000293748 ZSCAN26Q16670 478 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 MAPKAPK5Q8IW41 473 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 GPR161Q8N6U8 529 aaKnown RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 RPGRIP1Q96KN7 1286 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 HELLSQ9NRZ9 838 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 STAP2Q9UGK3 403 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 ZBTB22O15209 634 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 VIMP08670 466 aaKnown RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 NAPAP54920 295 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 GSTA5Q7RTV2 222 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 STMN2Q93045 179 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 FAM163AQ96GL9 167 aaPredicted RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 KCNH3Q9ULD8 1083 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 GPR75-ASB3A0A0A6YYF3 556 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 SMIM23A6NLE4 172 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 ACTN4O43707 911 aaKnown RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 CLNS1AP54105 237 aaKnown RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 CEP128Q6ZU80 1094 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 CACNA2D3Q8IZS8 1091 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 CABS1Q96KC9 395 aa13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNGAP1-201ENST00000293748 TSPY3P0CV98 308 aa13.15□□□□□ -0.31
SYNGAP1-201ENST00000293748 TSPY8P0CW00 308 aa13.15□□□□□ -0.31
SYNGAP1-201ENST00000293748 ATP2A2P16615 1042 aaKnown RBP13.15□□□□□ -0.31
SYNGAP1-201ENST00000293748 FOXP4Q8IVH2 680 aaPredicted RBP13.15□□□□□ -0.31
SYNGAP1-201ENST00000293748 ATP8A2Q9NTI2 1148 aa13.15□□□□□ -0.31
SYNGAP1-201ENST00000293748 NLRP12P59046 1061 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 CDC42EP5Q6NZY7 148 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 NUP58Q9BVL2 599 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 PI4KBQ9UBF8 816 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SGSM2O43147 1006 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 CUTAO60888 179 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 HPDP32754 393 aaPredicted RBP13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 ADD2P35612 726 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 ZNF157P51786 506 aaPredicted RBP13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SEPT6Q14141 434 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 DEFB115Q30KQ5 88 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SAMM50Q9Y512 469 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SNX14Q9Y5W7 946 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 MRVI1Q9Y6F6 885 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 COMMD10Q9Y6G5 202 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 CHD4Q14839 1912 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 ADM5C9JUS6 153 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 HSPA6P17066 643 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 PLCD3Q8N3E9 789 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SEC62Q99442 399 aaKnown RBP13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 SH2D4AQ9H788 454 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 ANAPC4Q9UJX5 808 aa13.14□□□□□ -0.31
SYNGAP1-201ENST00000293748 GNA11P29992 359 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PCK1P35558 622 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCT6AP40227 531 aaKnown RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PAK2Q13177 524 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PPP1R7Q15435 360 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCDC25Q86WR0 208 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 ARMT1Q9H993 441 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 ARPP21Q9UBL0 812 aaPredicted RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 CPA1P15085 419 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms