RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 GRAMD1BQ3KR37 738 aa12.11□□□□□ -0.47
MSH6-201ENST00000234420 ACCSLQ4AC99 568 aa12.11□□□□□ -0.47
MSH6-201ENST00000234420 ERFEQ4G0M1 354 aa12.11□□□□□ -0.47
MSH6-201ENST00000234420 ECHDC1Q9NTX5 307 aa12.11□□□□□ -0.47
MSH6-201ENST00000234420 NESP48681 1621 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 MCF2P10911 925 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 SUPT20HQ8NEM7 779 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 HOOK2Q96ED9 719 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 INTS9Q9NV88 658 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 SNAPC4Q5SXM2 1469 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 LRRIQ4A6NIV6 560 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 NOP14P78316 857 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 CTDSPL2Q05D32 466 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 FAM47AQ5JRC9 791 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 TTLL11Q8NHH1 800 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 CAPN11Q9UMQ6 739 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 PDCD6IPQ8WUM4 868 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 CAMSAP2Q08AD1 1489 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 SUPT3HO75486 399 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 MBD4O95243 580 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 DLATP10515 647 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 EEF1GP26641 437 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 POLGP54098 1239 aaPredicted RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 SH3GL2Q99962 352 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 PRDM1O75626 825 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 ADKP55263 362 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 ADCY1Q08828 1119 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 CNNM2Q9H8M5 875 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 CPSF3Q9UKF6 684 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 FLOT2Q14254 428 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 TMTC3Q6ZXV5 915 aa12.1□□□□□ -0.47
MSH6-201ENST00000234420 LRRC47Q8N1G4 583 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 RBM8AQ9Y5S9 174 aaKnown RBP12.1□□□□□ -0.47
MSH6-201ENST00000234420 RUSC2Q8N2Y8 1516 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 EFCAB8A8MWE9 144 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 VWA3BQ502W6 1294 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 TMTC1Q8IUR5 882 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 MCUQ8NE86 351 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ERLEC1Q96DZ1 483 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ZNF229Q9UJW7 825 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ANGPTL3Q9Y5C1 460 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 CUX1P39880 1505 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 MAGEA9P43362 315 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 CYP2J2P51589 502 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 PIK3AP1Q6ZUJ8 805 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ADAT2Q7Z6V5 191 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 SLC17A8Q8NDX2 589 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 PGBD1Q96JS3 809 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 MYO1CO00159 1063 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 HABP4Q5JVS0 413 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 NELFCDQ8IXH7 590 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 GABPB2Q8TAK5 448 aaPredicted RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 NOP53Q9NZM5 478 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 WARS2Q9UGM6 360 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 EIF4G3O43432 1585 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 MCF2LO15068 1137 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 THAP12O43422 761 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ITGA6P23229 1130 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 MSH2P43246 934 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 GNAQP50148 359 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 RNF219Q5W0B1 726 aaPredicted RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 KCNV2Q8TDN2 545 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 ANGPTL2Q9UKU9 493 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 NKTRP30414 1462 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 ACTN3Q08043 901 aaPredicted RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 FAM186BQ8IYM0 893 aa12.09□□□□□ -0.47
MSH6-201ENST00000234420 CCDC124Q96CT7 223 aaKnown RBP12.09□□□□□ -0.47
MSH6-201ENST00000234420 ENO4A6NNW6 628 aa12.08□□□□□ -0.47
MSH6-201ENST00000234420 NBNO60934 754 aa12.08□□□□□ -0.47
MSH6-201ENST00000234420 NPR1P16066 1061 aa12.08□□□□□ -0.47
MSH6-201ENST00000234420 RAPH1Q70E73 1250 aa12.08□□□□□ -0.47
MSH6-201ENST00000234420 ARHGEF1Q92888 912 aaKnown RBP12.08□□□□□ -0.47
MSH6-201ENST00000234420 RAD50Q92878 1312 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 H0Y3Z8 333 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 DTNBO60941 627 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 HEXIM1O94992 359 aaKnown RBP12.08□□□□□ -0.48
MSH6-201ENST00000234420 TTBK2Q6IQ55 1244 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 ZNF449Q6P9G9 518 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 HDAC11Q96DB2 347 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 DESI2Q9BSY9 194 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.08□□□□□ -0.484e-9■■■□□ 16.4
MSH6-201ENST00000234420 PRR23AA6NEV1 266 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 NVLO15381 856 aaKnown RBP12.08□□□□□ -0.48
MSH6-201ENST00000234420 TMED10P49755 219 aaKnown RBP12.08□□□□□ -0.48
MSH6-201ENST00000234420 SV2BQ7L1I2 683 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 TTC6Q86TZ1 520 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 NR1H4Q96RI1 486 aaPredicted RBP12.08□□□□□ -0.48
MSH6-201ENST00000234420 ZCWPW1Q9H0M4 648 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 H0YC42 278 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 TRIM27P14373 513 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 DCAF4L1Q3SXM0 396 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 C7orf31Q8N865 590 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 RAET1EQ8TD07 263 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 COG4Q9H9E3 785 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 DBNDD1Q9H9R9 158 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 MAD1L1Q9Y6D9 718 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 SYNRGQ9UMZ2 1314 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 FAM95CA0A1B0GW59 222 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 B4E1Z4 1266 aa12.08□□□□□ -0.48
MSH6-201ENST00000234420 GNA11P29992 359 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms