RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 FAM83AQ86UY5 434 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 DCPSQ96C86 337 aaKnown RBP13.21□□□□□ -0.29
LINC00538-201ENST00000626109 OSBPL5Q9H0X9 879 aaPredicted RBP13.21□□□□□ -0.29
LINC00538-201ENST00000626109 DDX4Q9NQI0 724 aaKnown RBP13.21□□□□□ -0.29
LINC00538-201ENST00000626109 MCM9Q9NXL9 1143 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 FAM198AQ9UFP1 575 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 CTNNA3Q9UI47 895 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 ZMYM6O95789 1325 aa13.21□□□□□ -0.29
LINC00538-201ENST00000626109 VPS37CA5D8V6 355 aaPredicted RBP13.21□□□□□ -0.3
LINC00538-201ENST00000626109 FOXP2O15409 715 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 RBP3P10745 1247 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 PSMC1P62191 440 aaKnown RBP13.21□□□□□ -0.3
LINC00538-201ENST00000626109 VAC14Q08AM6 782 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 CHCHD4Q8N4Q1 142 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 TGIF2Q9GZN2 237 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 ARPP21Q9UBL0 812 aaPredicted RBP13.21□□□□□ -0.3
LINC00538-201ENST00000626109 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 NAV1Q8NEY1 1877 aa13.21□□□□□ -0.3
LINC00538-201ENST00000626109 FOCADQ5VW36 1801 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 LARGE1O95461 756 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 POLR3DP05423 398 aaPredicted RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 RPS6KB1P23443 525 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 TRAPPC10P48553 1259 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 CDC37Q16543 378 aaPredicted RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 ZSCAN29Q8IWY8 852 aaPredicted RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 FAM151AQ8WW52 585 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 SCAND2PQ9GZW5 306 aaPredicted RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 SAP30BPQ9UHR5 308 aaKnown RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 TPCN1Q9ULQ1 816 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 COL2A1P02458 1487 aaPredicted RBP13.2□□□□□ -0.3
LINC00538-201ENST00000626109 CDK5RAP2Q96SN8 1893 aa13.2□□□□□ -0.3
LINC00538-201ENST00000626109 HLA-DOAP06340 250 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 TPM3P06753 285 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 YY1P25490 414 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 DNM1Q05193 864 aaKnown RBP13.19□□□□□ -0.3
LINC00538-201ENST00000626109 SULF1Q8IWU6 871 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 DHX36Q9H2U1 1008 aaKnown RBP13.19□□□□□ -0.3
LINC00538-201ENST00000626109 PPP2R3BQ9Y5P8 575 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 ELP1O95163 1332 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 CNTNAP1P78357 1384 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 USP17L12C9JPN9 530 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 USP17L21D6R901 530 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 DPYSL4O14531 572 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 CCDC192P0DO97 292 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 XRCC5P13010 732 aaKnown RBP13.19□□□□□ -0.3
LINC00538-201ENST00000626109 NAT1P18440 290 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 NDUFV2P19404 249 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 SSTR3P32745 418 aaPredicted RBP13.19□□□□□ -0.3
LINC00538-201ENST00000626109 RASA3Q14644 834 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 IMMTQ16891 758 aaKnown RBP13.19□□□□□ -0.3
LINC00538-201ENST00000626109 SBK1Q52WX2 424 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 CCDC70Q6NSX1 233 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 TTC6Q86TZ1 520 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 LDHDQ86WU2 507 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 ERP27Q96DN0 273 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 PGAP2Q9UHJ9 254 aa13.19□□□□□ -0.3
LINC00538-201ENST00000626109 DDX60LQ5H9U9 1706 aaKnown RBP13.18□□□□□ -0.3
LINC00538-201ENST00000626109 GOLGA6L4A6NEF3 574 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 PRSS47A8MTI9 375 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 MINDY4BA8MYZ0 360 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 MTA2O94776 668 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 PEX19P40855 299 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 CTR9Q6PD62 1173 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 NYAP1Q6ZVC0 841 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 ZFPM1Q8IX07 1006 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 SAMD3Q8N6K7 520 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 TMEM39BQ9GZU3 492 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 DEFB129Q9H1M3 183 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 R3HCC1Q9Y3T6 440 aaKnown RBP13.18□□□□□ -0.3
LINC00538-201ENST00000626109 ATRNL1Q5VV63 1379 aa13.18□□□□□ -0.3
LINC00538-201ENST00000626109 ENPP3O14638 875 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 ZNF213O14771 459 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 NAT2P11245 290 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 SLC4A8Q2Y0W8 1093 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 KRT26Q7Z3Y9 468 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 NECAB1Q8N987 351 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 CHMP4CQ96CF2 233 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 ARNT2Q9HBZ2 717 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 SCAF8Q9UPN6 1271 aaKnown RBP13.17□□□□□ -0.3
LINC00538-201ENST00000626109 SLC26A4O43511 780 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 ADCY5O95622 1261 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 KRT18P05783 430 aaKnown RBP13.17□□□□□ -0.3
LINC00538-201ENST00000626109 SLC3A2P08195 630 aaKnown RBP13.17□□□□□ -0.3
LINC00538-201ENST00000626109 POTEIP0CG38 1075 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 POTEJP0CG39 1038 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 CYP2D6P10635 497 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 PPARAQ07869 468 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 C12orf60Q5U649 245 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 KRT77Q7Z794 578 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 FRMD6Q96NE9 622 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 CSRNP1Q96S65 589 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 PTPRHQ9HD43 1115 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 PRM3Q9NNZ6 103 aa13.17□□□□□ -0.3
LINC00538-201ENST00000626109 MYH1P12882 1939 aa13.16□□□□□ -0.3
LINC00538-201ENST00000626109 BAZ2AQ9UIF9 1905 aaKnown RBP13.16□□□□□ -0.3
LINC00538-201ENST00000626109 CYP2D7A0A087X1C5 515 aa13.16□□□□□ -0.3
LINC00538-201ENST00000626109 DDTLA6NHG4 134 aaPredicted RBP13.16□□□□□ -0.3
LINC00538-201ENST00000626109 GOLGA6L6A8MZA4 724 aa13.16□□□□□ -0.3
LINC00538-201ENST00000626109 HAND2P61296 217 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms