RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 GMCL1Q96IK5 515 aa22.48■■□□□ 1.19
CDX1-202ENST00000616154 LNPKQ9C0E8 428 aa22.48■■□□□ 1.19
CDX1-202ENST00000616154 OSBPL3Q9H4L5 887 aa22.48■■□□□ 1.19
CDX1-202ENST00000616154 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.48■■□□□ 1.19
CDX1-202ENST00000616154 MOXD2PA6NHM9 499 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 DLL1O00548 723 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 KIAA0355O15063 1070 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 FOXP2O15409 715 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 DUSP11O75319 330 aaKnown RBP22.47■■□□□ 1.19
CDX1-202ENST00000616154 STAT2P52630 851 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 ACLYP53396 1101 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 ACVR2BQ13705 512 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 CCSAPQ6IQ19 270 aaPredicted RBP22.47■■□□□ 1.19
CDX1-202ENST00000616154 CHD1LQ86WJ1 897 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 GUCD1Q96NT3 240 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 ABHD16BQ9H3Z7 469 aa22.47■■□□□ 1.19
CDX1-202ENST00000616154 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.47■■□□□ 1.19
CDX1-202ENST00000616154 TMEM232C9JQI7 657 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 PQBP1O60828 265 aaKnown RBP22.46■■□□□ 1.19
CDX1-202ENST00000616154 ITGB8P26012 769 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 CST5P28325 142 aaPredicted RBP22.46■■□□□ 1.19
CDX1-202ENST00000616154 ANKRD33Q7Z3H0 272 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 FAM160B2Q86V87 743 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 CHURC1Q8WUH1 139 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 NUP133Q8WUM0 1156 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 TOX2Q96NM4 488 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 STARD7Q9NQZ5 370 aa22.46■■□□□ 1.19
CDX1-202ENST00000616154 ZNF697Q5TEC3 545 aa22.45■■□□□ 1.18
CDX1-202ENST00000616154 CCDC129Q6ZRS4 1044 aa22.45■■□□□ 1.18
CDX1-202ENST00000616154 STAG1Q8WVM7 1258 aa22.45■■□□□ 1.18
CDX1-202ENST00000616154 ACAD9Q9H845 621 aa22.45■■□□□ 1.18
CDX1-202ENST00000616154 PLA2G6O60733 806 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 SLC1A4P43007 532 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 KCNA10Q16322 511 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 ARMCX2Q7L311 632 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 UPF3AQ9H1J1 476 aaKnown RBP22.44■■□□□ 1.18
CDX1-202ENST00000616154 HOMER2Q9NSB8 354 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 ISY1Q9ULR0 285 aaKnown RBP22.44■■□□□ 1.18
CDX1-202ENST00000616154 LRRC37A2A6NM11 1700 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 ZNF536O15090 1300 aa22.44■■□□□ 1.18
CDX1-202ENST00000616154 MYADML2A6NDP7 307 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 TSPY2A6NKD2 308 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 ADCY6O43306 1168 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 RAG1P15918 1043 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 SMAD3P84022 425 aaKnown RBP22.43■■□□□ 1.18
CDX1-202ENST00000616154 FAAP100Q0VG06 881 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 CCDC144BQ3MJ40 725 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 PLEKHM2Q8IWE5 1019 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 FAM133AQ8N9E0 248 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 KATNBL1Q9H079 304 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 IL17RBQ9NRM6 502 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 RNF146Q9NTX7 359 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 TMEM39AQ9NV64 488 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 ANAPC4Q9UJX5 808 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 STX8Q9UNK0 236 aa22.43■■□□□ 1.18
CDX1-202ENST00000616154 DCDC2CA8MYV0 355 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 MCCP23508 829 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 GJA9P57773 515 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 CTDSPL2Q05D32 466 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 IKQ13123 557 aaPredicted RBP22.42■■□□□ 1.18
CDX1-202ENST00000616154 TKFCQ3LXA3 575 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 CCDC144CPQ8IYA2 1237 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 PCSK9Q8NBP7 692 aaKnown RBP22.42■■□□□ 1.18
CDX1-202ENST00000616154 AGBL1Q96MI9 1066 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 FAM161BQ96MY7 647 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 SPC25Q9HBM1 224 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 HELLSQ9NRZ9 838 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 UNC80Q8N2C7 3258 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 ELP1O95163 1332 aa22.42■■□□□ 1.18
CDX1-202ENST00000616154 C6orf222P0C671 652 aaPredicted RBP22.41■■□□□ 1.18
CDX1-202ENST00000616154 NOVP48745 357 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 CNTN2Q02246 1040 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 RCSD1Q6JBY9 416 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 B4GALNT3Q6L9W6 998 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 GLT1D1Q96MS3 346 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 A1CFQ9NQ94 594 aaKnown RBP22.41■■□□□ 1.18
CDX1-202ENST00000616154 INCENPQ9NQS7 918 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 LCTP09848 1927 aa22.41■■□□□ 1.18
CDX1-202ENST00000616154 ORC4O43929 436 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 NMT2O60551 498 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 EPHB4P54760 987 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 FPGSQ05932 587 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 ALX1Q15699 326 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 VPS53Q5VIR6 699 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 KCTD1Q719H9 257 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 MROH7Q68CQ1 1323 aa22.4■■□□□ 1.18
CDX1-202ENST00000616154 ASGR1P07306 291 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 FGRP09769 529 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 NKX3-2P78367 333 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 IRX5P78411 483 aaPredicted RBP22.39■■□□□ 1.18
CDX1-202ENST00000616154 CHMP4CQ96CF2 233 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 RNPC3Q96LT9 517 aaKnown RBP22.39■■□□□ 1.18
CDX1-202ENST00000616154 TRERF1Q96PN7 1200 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 TBX21Q9UL17 535 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 PRR12Q9ULL5 1215 aa22.39■■□□□ 1.18
CDX1-202ENST00000616154 SOWAHBA6NEL2 793 aa22.38■■□□□ 1.17
CDX1-202ENST00000616154 CTAGE5O15320 804 aa22.38■■□□□ 1.17
CDX1-202ENST00000616154 RANBP6O60518 1105 aaKnown RBP22.38■■□□□ 1.17
CDX1-202ENST00000616154 ALAS1P13196 640 aa22.38■■□□□ 1.17
CDX1-202ENST00000616154 CDK7P50613 346 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms