RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PNMA2Q9UL42 364 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 PLXNA1Q9UIW2 1896 aa16.13■□□□□ 0.17
TRIM28-211ENST00000597968 LOC102724159A0A0B4J2E5 919 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 ASB14A6NK59 587 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 TMEM232C9JQI7 657 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 TAL1P17542 331 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 ACLYP53396 1101 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 SMAD3P84022 425 aaKnown RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 TLE2Q04725 743 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 PWP2Q15269 919 aaKnown RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 ANKRD45Q5TZF3 282 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 CCSAPQ6IQ19 270 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 OTUD7AQ8TE49 926 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 FERMT2Q96AC1 680 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 GLT1D1Q96MS3 346 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 PRDM5Q9NQX1 630 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-211ENST00000597968 STARD7Q9NQZ5 370 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 STX8Q9UNK0 236 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 SYNRGQ9UMZ2 1314 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 LTBP2Q14767 1821 aa16.12■□□□□ 0.17
TRIM28-211ENST00000597968 MYH4Q9Y623 1939 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 TMEM265A0A087WTH1 108 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 DCDC2CA8MYV0 355 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 PDE1AP54750 535 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 GJA9P57773 515 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 ARMCX2Q7L311 632 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 FAM133AQ8N9E0 248 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 DCAF4Q8WV16 495 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 BADQ92934 168 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 UPF3AQ9H1J1 476 aaKnown RBP16.11■□□□□ 0.17
TRIM28-211ENST00000597968 TCP11L1Q9NUJ3 509 aa16.11■□□□□ 0.17
TRIM28-211ENST00000597968 ZHX1Q9UKY1 873 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-211ENST00000597968 A0A0C4DFX4 3053 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 TRIM43BA6NCK2 446 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 FOXP2O15409 715 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 MFAP1P55081 439 aaKnown RBP16.1■□□□□ 0.17
TRIM28-211ENST00000597968 IKQ13123 557 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-211ENST00000597968 MCMDC2Q4G0Z9 681 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 ZNF697Q5TEC3 545 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 TRIM43Q96BQ3 446 aaPredicted RBP16.1■□□□□ 0.17
TRIM28-211ENST00000597968 CRBNQ96SW2 442 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 IL17RBQ9NRM6 502 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 ZNF536O15090 1300 aa16.1■□□□□ 0.17
TRIM28-211ENST00000597968 RAG1P15918 1043 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 MCCP23508 829 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 SHHQ15465 462 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 KCNA10Q16322 511 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 CCDC144BQ3MJ40 725 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 CCDC174Q6PII3 467 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 BTNL9Q6UXG8 535 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 Q7L0L9 218 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 CCDC144CPQ8IYA2 1237 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 FGD4Q96M96 766 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 TTC14Q96N46 770 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 MAF1Q9H063 256 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 A1CFQ9NQ94 594 aaKnown RBP16.09■□□□□ 0.17
TRIM28-211ENST00000597968 RNF146Q9NTX7 359 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 TMEM39AQ9NV64 488 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 Q9Y3F1 56 aa16.09■□□□□ 0.17
TRIM28-211ENST00000597968 RANBP6O60518 1105 aaKnown RBP16.08■□□□□ 0.16
TRIM28-211ENST00000597968 CABYRO75952 493 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 ICAM1P05362 532 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 FAAP100Q0VG06 881 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 CCDC129Q6ZRS4 1044 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 SH3RF1Q7Z6J0 888 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 TRERF1Q96PN7 1200 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 KATNBL1Q9H079 304 aa16.08■□□□□ 0.16
TRIM28-211ENST00000597968 SMCHD1A6NHR9 2005 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 A0A0U1RQG5 324 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 PQBP1O60828 265 aaKnown RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 TIMP1P01033 207 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 FGAP02671 866 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 ASGR1P07306 291 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 C6orf222P0C671 652 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 TOP1P11387 765 aaKnown RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 SLC4A3P48751 1232 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 CDK7P50613 346 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 FPGSQ05932 587 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 CTDSPL2Q05D32 466 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 RNF41Q9H4P4 317 aaPredicted RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 PRR12Q9ULL5 1215 aa16.07■□□□□ 0.16
TRIM28-211ENST00000597968 ISY1Q9ULR0 285 aaKnown RBP16.07■□□□□ 0.16
TRIM28-211ENST00000597968 ARVCFO00192 962 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 TLR3O15455 904 aaKnown RBP16.06■□□□□ 0.16
TRIM28-211ENST00000597968 ZEB2O60315 1214 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 GNASQ5JWF2 1037 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 IQSEC1Q6DN90 963 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 KCTD1Q719H9 257 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 SMC5Q8IY18 1101 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 MORC4Q8TE76 937 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 AGBL1Q96MI9 1066 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 RANBP17Q9H2T7 1088 aaKnown RBP16.06■□□□□ 0.16
TRIM28-211ENST00000597968 RWDD1Q9H446 243 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-211ENST00000597968 OSBPL3Q9H4L5 887 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 HOMER2Q9NSB8 354 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 ADD3Q9UEY8 706 aaKnown RBP16.06■□□□□ 0.16
TRIM28-211ENST00000597968 TBX21Q9UL17 535 aa16.06■□□□□ 0.16
TRIM28-211ENST00000597968 HSPD1P10809 573 aaKnown RBP16.05■□□□□ 0.16
TRIM28-211ENST00000597968 ALAS1P13196 640 aa16.05■□□□□ 0.16
TRIM28-211ENST00000597968 TNFAIP2Q03169 654 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms