RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ANKRD35Q8N283 1001 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 AGBL1Q96MI9 1066 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 ACAD9Q9H845 621 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 CCPG1Q9ULG6 757 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 DIS3Q9Y2L1 958 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 RPTORQ8N122 1335 aa20.17■□□□□ 0.82
SHKBP1-212ENST00000596163 CCDC69A6NI79 296 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 COBLO75128 1261 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 ALAS1P13196 640 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 HSPA4P34932 840 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 LIFRP42702 1097 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 SNAP25P60880 206 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 CCL14Q16627 93 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 NPLOC4Q8TAT6 608 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 KCNB2Q92953 911 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 TRERF1Q96PN7 1200 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 UBA5Q9GZZ9 404 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 UNC93B1Q9H1C4 597 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 RNF146Q9NTX7 359 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 ZNF536O15090 1300 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 WDR19Q8NEZ3 1342 aa20.16■□□□□ 0.82
SHKBP1-212ENST00000596163 DHX16O60231 1041 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 DHX32Q7L7V1 743 aaKnown RBP20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 RASEFQ8IZ41 740 aa20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 MAP3K14Q99558 947 aa20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 LY9Q9HBG7 655 aa20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 HOMER2Q9NSB8 354 aa20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 PARP14Q460N5 1801 aa20.15■□□□□ 0.82
SHKBP1-212ENST00000596163 KLRF2D3W0D1 207 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 SH2B2O14492 632 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 DDAH1O94760 285 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 PRKAR2AP13861 404 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 GRM4Q14833 912 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 ZNF792Q3KQV3 632 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 MAP3K21Q5TCX8 1036 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 SYNE3Q6ZMZ3 975 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 ADGRF4Q8IZF3 695 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 MAML3Q96JK9 1138 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 DOCK3Q8IZD9 2030 aa20.14■□□□□ 0.81
SHKBP1-212ENST00000596163 PFASO15067 1338 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 POTEFA5A3E0 1075 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 PALM3A6NDB9 673 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 PGK2P07205 417 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 CALM1P0DP23 149 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 CALM2P0DP24 149 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 CALM3P0DP25 149 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 PSMA5P28066 241 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 KIF5BP33176 963 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 GJA8P48165 433 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 CACNB2Q08289 660 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 TROAPQ12815 778 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 TRIM32Q13049 653 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 CTCFLQ8NI51 663 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 VAT1LQ9HCJ6 419 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 PAK6Q9NQU5 681 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 FLRT1Q9NZU1 646 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 MAD2L2Q9UI95 211 aa20.13■□□□□ 0.81
SHKBP1-212ENST00000596163 SGPL1O95470 568 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 TRAF1Q13077 416 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 ZNF654Q8IZM8 581 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 MSL3Q8N5Y2 521 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 U2AF1L4Q8WU68 220 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 NUP133Q8WUM0 1156 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 DEFB118Q96PH6 123 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 LZTS2Q9BRK4 669 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 SENP2Q9HC62 589 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 SNX14Q9Y5W7 946 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 SLC12A7Q9Y666 1083 aa20.12■□□□□ 0.81
SHKBP1-212ENST00000596163 DNAJC25-GNG10A0A024R161 153 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 POTEB2H3BUK9 544 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 TFRCP02786 760 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 EN2P19622 333 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 CYP2C19P33261 490 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 GNAQP50148 359 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 FGD1P98174 961 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 EXOSC10Q01780 885 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 MLLT1Q03111 559 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 CDC37Q16543 378 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 ADCK5Q3MIX3 580 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 ZNF467Q7Z7K2 595 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 STAG2Q8N3U4 1231 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 TINF2Q9BSI4 451 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 USP26Q9BXU7 913 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 MAF1Q9H063 256 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 JMJD4Q9H9V9 463 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 NRBP1Q9UHY1 535 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 PLXNB2O15031 1838 aa20.11■□□□□ 0.81
SHKBP1-212ENST00000596163 BLOC1S2Q6QNY1 142 aa20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 SGMS1Q86VZ5 419 aa20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 JAKMIP1Q96N16 626 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 CPVLQ9H3G5 476 aa20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 A1CFQ9NQ94 594 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 GPHNQ9NQX3 736 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 ZNF236Q9UL36 1845 aa20.1■□□□□ 0.81
SHKBP1-212ENST00000596163 COL11A1P12107 1806 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-212ENST00000596163 MSCO60682 206 aa20.09■□□□□ 0.81
SHKBP1-212ENST00000596163 IGHA2P01877 340 aa20.09■□□□□ 0.81
SHKBP1-212ENST00000596163 SMARCA1P28370 1054 aa20.09■□□□□ 0.81
SHKBP1-212ENST00000596163 NSMFQ6X4W1 530 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms