RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 SFSWAPQ12872 951 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DMP1Q13316 513 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 BFSP2Q13515 415 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DGKZQ13574 1117 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SNRNP48Q6IEG0 339 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DCUN1D2Q6PH85 259 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KCNV1Q6PIU1 500 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF139Q8WU17 664 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DHX58Q96C10 678 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SYNDIG1Q9H7V2 258 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 INCENPQ9NQS7 918 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SEC31BQ9NQW1 1179 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TOPORSQ9NS56 1045 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MOSPD1Q9UJG1 213 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MROH1Q8NDA8 1641 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KIF24Q5T7B8 1368 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 FRMPD2Q68DX3 1309 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6CA6NDK9 693 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6BA6NDN3 693 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 NEMP1O14524 444 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TRAPPC3O43617 180 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GH2P01242 217 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6DP0CG33 693 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP2A2P16615 1042 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CIITAP33076 1130 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GCLCP48506 637 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 IFFO1Q0D2I5 559 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 RILPL1Q5EBL4 403 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SYDE2Q5VT97 1194 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SUSD4Q5VX71 490 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TSHZ3Q63HK5 1081 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP1SQ66K74 1059 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TMED8Q6PL24 325 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PIK3AP1Q6ZUJ8 805 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 REM2Q8IYK8 340 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PCSK9Q8NBP7 692 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 NEK11Q8NG66 645 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KLHDC4Q8TBB5 520 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 NSUN6Q8TEA1 469 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TCP11Q8WWU5 503 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 BBXQ8WY36 941 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D31Q96DN5 1066 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GPR101Q96P66 508 aaPredicted RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CTAGE1Q96RT6 745 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 WDR11Q9BZH6 1224 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC7A5P2Q9GIP4 190 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CSRNP2Q9H175 543 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CD209Q9NNX6 404 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ATG3Q9NT62 314 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA6AQ9NYA3 693 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP3K20Q9NYL2 800 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 FBXL21Q9UKT6 434 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 AGTPBP1Q9UPW5 1226 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TTLL3Q9Y4R7 772 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ADCY9O60503 1353 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 RREB1Q92766 1687 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KDM3AQ9Y4C1 1321 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 FKTNO75072 461 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF18P17022 549 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SFPQP23246 707 aaKnown RBP eCLIP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GJB2P29033 226 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 AMPD2Q01433 879 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 APOBRQ0VD83 1088 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT33BQ14525 404 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF174Q15697 407 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 GNASQ5JWF2 1037 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 SPECC1Q5M775 1068 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D9BQ66K14 1250 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ARMCX2Q7L311 632 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 CEP57Q86XR8 500 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 TRMT44Q8IYL2 757 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 AGBL3Q8NEM8 1001 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 IL17REQ8NFR9 667 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PLIN2Q99541 437 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ACAD9Q9H845 621 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 HERC5Q9UII4 1024 aaKnown RBP3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 RASAL2Q9UJF2 1139 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DOLKQ9UPQ8 538 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 AFG3L2Q9Y4W6 797 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PTPRUQ92729 1446 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 ROBO2Q9HCK4 1378 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PZPP20742 1482 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 PHLPP2Q6ZVD8 1323 aa3.25□□□□□ -1.89
SMCHD1-203ENST00000577880 DYNC1LI2O43237 492 aaPredicted RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 ZSCAN12O43309 604 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 KIF5CO60282 957 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 EVI5O60447 810 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC25A27O95847 323 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PDE6AP16499 860 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 RXRAP19793 462 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 TSPY1Q01534 308 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CTDSPL2Q05D32 466 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 COG2Q14746 738 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 STRIP1Q5VSL9 837 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 BTBD8Q5XKL5 378 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 CNNM4Q6P4Q7 775 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 NOP9Q86U38 636 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 PGBD4Q96DM1 585 aa3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 MRPL44Q9H9J2 332 aaKnown RBP3.24□□□□□ -1.89
SMCHD1-203ENST00000577880 DDX19AQ9NUU7 478 aaKnown RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms