RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 HIP1RO75146 1068 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 RNASE1P07998 156 aaKnown RBP7.71□□□□□ -1.18
VPS29-210ENST00000552130 CD8BP10966 210 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 TERF1P54274 439 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 SSRP1Q08945 709 aaKnown RBP7.71□□□□□ -1.18
VPS29-210ENST00000552130 CYP27C1Q4G0S4 372 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 CCDC93Q567U6 631 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 MORC1Q86VD1 984 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 ZSWIM2Q8NEG5 633 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 TMEM40Q8WWA1 233 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 ERP27Q96DN0 273 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 KRTAP4-11Q9BYQ6 195 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 RAD18Q9NS91 495 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 MBNL3Q9NUK0 354 aaKnown RBP7.71□□□□□ -1.18
VPS29-210ENST00000552130 POLG2Q9UHN1 485 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 PUF60Q9UHX1 559 aaKnown RBP7.71□□□□□ -1.18
VPS29-210ENST00000552130 FBXO2Q9UK22 296 aaPredicted RBP7.71□□□□□ -1.18
VPS29-210ENST00000552130 ADAMTS6Q9UKP5 1117 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 ASAP1Q9ULH1 1129 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 DAGLAQ9Y4D2 1042 aa7.71□□□□□ -1.18
VPS29-210ENST00000552130 RASSF10A6NK89 507 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 FARP2O94887 1054 aaPredicted RBP7.7□□□□□ -1.18
VPS29-210ENST00000552130 ITPKAP23677 461 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 FXNQ16595 210 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 KIAA0319Q5VV43 1072 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 SPATC1Q76KD6 591 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 PASD1Q8IV76 773 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 PLD6Q8N2A8 252 aaKnown RBP7.7□□□□□ -1.18
VPS29-210ENST00000552130 TTC30BQ8N4P2 665 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 PPHLN1Q8NEY8 458 aaKnown RBP7.7□□□□□ -1.18
VPS29-210ENST00000552130 RIN3Q8TB24 985 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 SNRNP27Q8WVK2 155 aaKnown RBP7.7□□□□□ -1.18
VPS29-210ENST00000552130 MTMR8Q96EF0 704 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 CAMKK2Q96RR4 588 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 CORO1BQ9BR76 489 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 ZNF576Q9H609 170 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 OBP2AQ9NY56 170 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 UBP1Q9NZI7 540 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 ZNF180Q9UJW8 692 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 VAV3Q9UKW4 847 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 RABGAP1Q9Y3P9 1069 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 SUPT16HQ9Y5B9 1047 aaKnown RBP7.7□□□□□ -1.18
VPS29-210ENST00000552130 U3KQE9 123 aa7.7□□□□□ -1.18
VPS29-210ENST00000552130 BICDL2A1A5D9 508 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 KRTAP9-7A8MTY7 169 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 TMPRSS2O15393 492 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 HALP42357 657 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 EIF6P56537 245 aaKnown RBP7.69□□□□□ -1.18
VPS29-210ENST00000552130 FAM193AP78312 1265 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 MTMR1Q13613 665 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 CCDC96Q2M329 555 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 TMEM67Q5HYA8 995 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 LARP1BQ659C4 914 aaKnown RBP7.69□□□□□ -1.18
VPS29-210ENST00000552130 FBXL19Q6PCT2 694 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 NXPE4Q6UWF7 544 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 NECAB2Q7Z6G3 386 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 ZBTB46Q86UZ6 589 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 ZNF354CQ86Y25 554 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 DDX54Q8TDD1 881 aaKnown RBP7.69□□□□□ -1.18
VPS29-210ENST00000552130 NETO1Q8TDF5 533 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 FAM168AQ92567 244 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 CHMP4CQ96CF2 233 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 GPR101Q96P66 508 aaPredicted RBP7.69□□□□□ -1.18
VPS29-210ENST00000552130 HERPUD2Q9BSE4 406 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 KCNQ5Q9NR82 932 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 ZMYM5Q9UJ78 669 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 HDAC9Q9UKV0 1011 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 PPT2Q9UMR5 302 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 MAPRE3Q9UPY8 281 aa7.69□□□□□ -1.18
VPS29-210ENST00000552130 GSG1L2A8MUP6 293 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 VSTM5A8MXK1 200 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 DHX16O60231 1041 aaKnown RBP7.68□□□□□ -1.18
VPS29-210ENST00000552130 CPEP16870 476 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 RRM1P23921 792 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 POLD1P28340 1107 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 SARSP49591 514 aaKnown RBP7.68□□□□□ -1.18
VPS29-210ENST00000552130 PRKCQQ04759 706 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 LONRF1Q17RB8 773 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 CILP2Q8IUL8 1156 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 SUGP1Q8IWZ8 645 aaKnown RBP7.68□□□□□ -1.18
VPS29-210ENST00000552130 PJA1Q8NG27 643 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 SCLT1Q96NL6 688 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 STRBPQ96SI9 672 aaKnown RBP7.68□□□□□ -1.18
VPS29-210ENST00000552130 SARGQ9BW04 601 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 RC3H2Q9HBD1 1191 aaKnown RBP7.68□□□□□ -1.18
VPS29-210ENST00000552130 MKNK2Q9HBH9 465 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 CLIC5Q9NZA1 410 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 CRIM1Q9NZV1 1036 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 AKAP2Q9Y2D5 859 aa7.68□□□□□ -1.18
VPS29-210ENST00000552130 GREM1O60565 184 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 GJB6O95452 261 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 GIPRP48546 466 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 ITKQ08881 620 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 MESP2Q0VG99 397 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 PABPC4Q13310 644 aaKnown RBP eCLIP7.67□□□□□ -1.186e-6■■■■■ 28.1
VPS29-210ENST00000552130 CCDC85BQ15834 202 aaPredicted RBP7.67□□□□□ -1.18
VPS29-210ENST00000552130 HYIQ5T013 277 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 VPS37AQ8NEZ2 397 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 NKD1Q969G9 470 aa7.67□□□□□ -1.18
VPS29-210ENST00000552130 SKA1Q96BD8 255 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms