RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RARBP10826 455 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 LRRFIP1Q32MZ4 808 aaKnown RBP10.08□□□□□ -0.8
USP28-215ENST00000545608 SH3RF1Q7Z6J0 888 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 LRRC47Q8N1G4 583 aaKnown RBP10.08□□□□□ -0.8
USP28-215ENST00000545608 NEDD1Q8NHV4 660 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 KIFC2Q96AC6 838 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 LENG1Q96BZ8 264 aaPredicted RBP10.08□□□□□ -0.8
USP28-215ENST00000545608 DDX11Q96FC9 970 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 FSD1Q9BTV5 496 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 NACAP1Q9BZK3 213 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 ZNF287Q9HBT7 754 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 XPNPEP3Q9NQH7 507 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 INCENPQ9NQS7 918 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 MTMR10Q9NXD2 777 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 PRKAG2Q9UGJ0 569 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 PHF24Q9UPV7 400 aa10.08□□□□□ -0.8
USP28-215ENST00000545608 FRMPD3Q5JV73 1810 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 MYH7P12883 1935 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TRIM43BA6NCK2 446 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 C2orf72A6NCS6 295 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 FOXP2O15409 715 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TTLL1O95922 423 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TSPY3P0CV98 308 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TSPY8P0CW00 308 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 AKR1A1P14550 325 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 MX1P20591 662 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TFAP4Q01664 338 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TLE2Q04725 743 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 PPARAQ07869 468 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 C1orf53Q5VUE5 145 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 SLFN13Q68D06 897 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 ASTLQ6HA08 431 aaPredicted RBP10.07□□□□□ -0.8
USP28-215ENST00000545608 CCDC129Q6ZRS4 1044 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 SLC17A8Q8NDX2 589 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 GMCL1P1Q8NEA9 526 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 BADQ92934 168 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 TRIM43Q96BQ3 446 aaPredicted RBP10.07□□□□□ -0.8
USP28-215ENST00000545608 CHMP4CQ96CF2 233 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 NAPBQ9H115 298 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 SLC38A10Q9HBR0 1119 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 PRDM5Q9NQX1 630 aaPredicted RBP10.07□□□□□ -0.8
USP28-215ENST00000545608 PDLIM7Q9NR12 457 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 FEM1BQ9UK73 627 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 CTDP1Q9Y5B0 961 aaPredicted RBP10.07□□□□□ -0.8
USP28-215ENST00000545608 TACC3Q9Y6A5 838 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 SZT2Q5T011 3432 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 MYH8P13535 1937 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 GREB1LQ9C091 1923 aaPredicted RBP10.07□□□□□ -0.8
USP28-215ENST00000545608 SALL3Q9BXA9 1300 aa10.07□□□□□ -0.8
USP28-215ENST00000545608 PARP14Q460N5 1801 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 POTEB2H3BUK9 544 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 ADAMTS4O75173 837 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 BMP3P12645 472 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 ITGB8P26012 769 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 RRP1P56182 461 aaKnown RBP10.06□□□□□ -0.8
USP28-215ENST00000545608 CTDSPL2Q05D32 466 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 PDE4BQ07343 736 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 SHHQ15465 462 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 C9orf50Q5SZB4 431 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 ANKRD45Q5TZF3 282 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 MAMDC4Q6UXC1 1216 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 RNF180Q86T96 592 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 MSL3Q8N5Y2 521 aaKnown RBP10.06□□□□□ -0.8
USP28-215ENST00000545608 FGD4Q96M96 766 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 CRBNQ96SW2 442 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 FAM184BQ9ULE4 1060 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 SYNPO2Q9UMS6 1093 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 CNPY2Q9Y2B0 182 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP28-215ENST00000545608 SYNGAP1Q96PV0 1343 aa10.06□□□□□ -0.8
USP28-215ENST00000545608 COL11A1P12107 1806 aaPredicted RBP10.05□□□□□ -0.8
USP28-215ENST00000545608 PLIN4Q96Q06 1357 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 MYADML2A6NDP7 307 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 TMEM232C9JQI7 657 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 SLC3A2P08195 630 aaKnown RBP10.05□□□□□ -0.8
USP28-215ENST00000545608 ACVR2BQ13705 512 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 VPS53Q5VIR6 699 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 ANKRD35Q8N283 1001 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 KLHDC9Q8NEP7 349 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 CHST13Q8NET6 341 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 IL17RBQ9NRM6 502 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.05□□□□□ -0.8
USP28-215ENST00000545608 ZHX1Q9UKY1 873 aaPredicted RBP10.05□□□□□ -0.8
USP28-215ENST00000545608 STXBP5LQ9Y2K9 1186 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 SMCHD1A6NHR9 2005 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 ZNFX1Q9P2E3 1918 aaKnown RBP10.05□□□□□ -0.8
USP28-215ENST00000545608 ZNF536O15090 1300 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 SYNRGQ9UMZ2 1314 aa10.05□□□□□ -0.8
USP28-215ENST00000545608 A0A1W2PQ45 241 aaPredicted RBP10.04□□□□□ -0.8
USP28-215ENST00000545608 A0A1W2PQY0 241 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 ADCY6O43306 1168 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 NMT2O60551 498 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 MCCP23508 829 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 ACLYP53396 1101 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 OAZ1P54368 228 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 PDE1AP54750 535 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 SNAP25P60880 206 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 KCNA10Q16322 511 aa10.04□□□□□ -0.8
USP28-215ENST00000545608 FAM109BQ6ICB4 259 aaPredicted RBP10.04□□□□□ -0.8
USP28-215ENST00000545608 CCSAPQ6IQ19 270 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms