RNA–Protein interactions for RNA: ENST00000484186.5

NUP50-215, Transcript of nucleoporin 50, human

TSL 5

Gene NUP50, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-215	ENST00000484186	LBHD1	Q9BQE6	289 aa	Predicted RBP	11.15	□□□□□ -0.62
NUP50-215	ENST00000484186	TCP11L1	Q9NUJ3	509 aa		11.15	□□□□□ -0.62
NUP50-215	ENST00000484186	PRKAG2	Q9UGJ0	569 aa		11.15	□□□□□ -0.62
NUP50-215	ENST00000484186	PHF24	Q9UPV7	400 aa		11.15	□□□□□ -0.62
NUP50-215	ENST00000484186	SMCHD1	A6NHR9	2005 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	ZNF536	O15090	1300 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	ZMYM6	O95789	1325 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	CCDC171	Q6TFL3	1326 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	RANBP2	P49792	3224 aa	Known RBP	11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	MFAP1	P55081	439 aa	Known RBP	11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	SNX17	Q15036	470 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	RRP12	Q5JTH9	1297 aa	Known RBP	11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	DCAF4	Q8WV16	495 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	ACAD9	Q9H845	621 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	HOMER2	Q9NSB8	354 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	MTMR7	Q9Y216	660 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	PLXNA1	Q9UIW2	1896 aa		11.14	□□□□□ -0.63
NUP50-215	ENST00000484186	POTEB2	H3BUK9	544 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	ADAMTS4	O75173	837 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	TOP1	P11387	765 aa	Known RBP	11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	PC	P11498	1178 aa	Known RBP	11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	ALAS1	P13196	640 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	HAND2	P61296	217 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	CNTN2	Q02246	1040 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	ACVR2B	Q13705	512 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	TRIM60	Q495X7	471 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	AKNAD1	Q5T1N1	836 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	GPR153	Q6NV75	609 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	CCDC174	Q6PII3	467 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	MFSD6	Q6ZSS7	791 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	LENG1	Q96BZ8	264 aa	Predicted RBP	11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	FGD4	Q96M96	766 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	TRERF1	Q96PN7	1200 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	TMEM47	Q9BQJ4	181 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	TSEN34	Q9BSV6	310 aa	Known RBP	11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	ABHD16B	Q9H3Z7	469 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	A1CF	Q9NQ94	594 aa	Known RBP	11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	RNF146	Q9NTX7	359 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186	PRR12	Q9ULL5	1215 aa		11.13	□□□□□ -0.63
NUP50-215	ENST00000484186		A0A1W2PQ45	241 aa	Predicted RBP	11.12	□□□□□ -0.63
NUP50-215	ENST00000484186		A0A1W2PQY0	241 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	DUSP11	O75319	330 aa	Known RBP	11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	SNAP25	P60880	206 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	CCDC96	Q2M329	555 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	TTBK2	Q6IQ55	1244 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	BTNL9	Q6UXG8	535 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	ARMCX2	Q7L311	632 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	RASGRP2	Q7LDG7	609 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	CCDC144CP	Q8IYA2	1237 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	FAM133A	Q8N9E0	248 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	KLHDC9	Q8NEP7	349 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	TTC14	Q96N46	770 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	RNF41	Q9H4P4	317 aa	Predicted RBP	11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	PDLIM7	Q9NR12	457 aa		11.12	□□□□□ -0.63
NUP50-215	ENST00000484186	SYNRG	Q9UMZ2	1314 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SOWAHB	A6NEL2	793 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	MOXD2P	A6NHM9	499 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	ASB14	A6NK59	587 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	HIP1	O00291	1037 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	ZNF213	O14771	459 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SLC16A2	P36021	539 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	ACLY	P53396	1101 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	TLE2	Q04725	743 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	KCNA10	Q16322	511 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	CCDC144B	Q3MJ40	725 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	MUM1L1	Q5H9M0	696 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SYDE2	Q5VT97	1194 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	CWC27	Q6UX04	472 aa	Known RBP	11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SH3RF1	Q7Z6J0	888 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	TBC1D10C	Q8IV04	446 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	NUP133	Q8WUM0	1156 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	KATNBL1	Q9H079	304 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	RANBP17	Q9H2T7	1088 aa	Known RBP	11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SPC25	Q9HBM1	224 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	DIAPH3	Q9NSV4	1193 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	CCPG1	Q9ULG6	757 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	SZT2	Q5T011	3432 aa		11.11	□□□□□ -0.63
NUP50-215	ENST00000484186	TRIM43B	A6NCK2	446 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	ICAM1	P05362	532 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	C6orf222	P0C671	652 aa	Predicted RBP	11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	CST5	P28325	142 aa	Predicted RBP	11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	GJA9	P57773	515 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	PCSK9	Q8NBP7	692 aa	Known RBP	11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	ESR2	Q92731	530 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	BAD	Q92934	168 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	UPF3A	Q9H1J1	476 aa	Known RBP	11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	GPCPD1	Q9NPB8	672 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	STARD7	Q9NQZ5	370 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	CYP39A1	Q9NYL5	469 aa		11.1	□□□□□ -0.63
NUP50-215	ENST00000484186	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.09	□□□□□ -0.63
NUP50-215	ENST00000484186	MYADML2	A6NDP7	307 aa		11.09	□□□□□ -0.63
NUP50-215	ENST00000484186	ADCY6	O43306	1168 aa		11.09	□□□□□ -0.63
NUP50-215	ENST00000484186	CLTB	P09497	229 aa		11.09	□□□□□ -0.63
NUP50-215	ENST00000484186	SNHG28	P0DPA3	235 aa		11.09	□□□□□ -0.63

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