RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 PCP11498 1178 aaKnown RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 MFAP1P55081 439 aaKnown RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 NUCB1Q02818 461 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 IKQ13123 557 aaPredicted RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 NMIQ13287 307 aaPredicted RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 TRIM60Q495X7 471 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 CHD1LQ86WJ1 897 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 DCAF4Q8WV16 495 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 FERMT2Q96AC1 680 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 FGD4Q96M96 766 aa16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 ISY1Q9ULR0 285 aaKnown RBP16.98■□□□□ 0.31
SNRNP40-203ENST00000463988 CCDC171Q6TFL3 1326 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 TRIM6-TRIM34B2RNG4 842 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 DUSP11O75319 330 aaKnown RBP16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 ACVR2BQ13705 512 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 KCTD1Q719H9 257 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 ZNF589Q86UQ0 364 aaPredicted RBP16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 PLEKHM2Q8IWE5 1019 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 FAM133AQ8N9E0 248 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 KLHDC9Q8NEP7 349 aa16.97■□□□□ 0.31
SNRNP40-203ENST00000463988 MOXD2PA6NHM9 499 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 POTEB2H3BUK9 544 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 TOP1P11387 765 aaKnown RBP16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 B4GALNT3Q6L9W6 998 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 BTNL9Q6UXG8 535 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 ARMCX2Q7L311 632 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 RILPL2Q969X0 211 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 AGBL1Q96MI9 1066 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 PDLIM7Q9NR12 457 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 TOMM22Q9NS69 142 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 HOMER2Q9NSB8 354 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 RNF146Q9NTX7 359 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 ZHX1Q9UKY1 873 aaPredicted RBP16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 PRR12Q9ULL5 1215 aa16.96■□□□□ 0.31
SNRNP40-203ENST00000463988 SYNRGQ9UMZ2 1314 aa16.96■□□□□ 0.3
SNRNP40-203ENST00000463988 A0A1W2PQ45 241 aaPredicted RBP16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 A0A1W2PQY0 241 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 IGHDP01880 384 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 SDSP20132 328 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 CST5P28325 142 aaPredicted RBP16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 NT5C2P49902 561 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 ACLYP53396 1101 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 TLE2Q04725 743 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 CCSAPQ6IQ19 270 aaPredicted RBP16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 NUP133Q8WUM0 1156 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 LENG1Q96BZ8 264 aaPredicted RBP16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 TTC14Q96N46 770 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 TRERF1Q96PN7 1200 aa16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 A1CFQ9NQ94 594 aaKnown RBP16.95■□□□□ 0.3
SNRNP40-203ENST00000463988 ASB14A6NK59 587 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 ICAM1P05362 532 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 CNTN2Q02246 1040 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 CCDC144BQ3MJ40 725 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 RRP12Q5JTH9 1297 aaKnown RBP16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 AKNAD1Q5T1N1 836 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 MFSD6Q6ZSS7 791 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 ANKRD33Q7Z3H0 272 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 CCDC144CPQ8IYA2 1237 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 PCSK9Q8NBP7 692 aaKnown RBP16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 EXOC6Q8TAG9 804 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 TOX2Q96NM4 488 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 TMEM47Q9BQJ4 181 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 KATNBL1Q9H079 304 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 UPF3AQ9H1J1 476 aaKnown RBP16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 RNF41Q9H4P4 317 aaPredicted RBP16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 SPC25Q9HBM1 224 aa16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 PRDM5Q9NQX1 630 aaPredicted RBP16.94■□□□□ 0.3
SNRNP40-203ENST00000463988 LTBP2Q14767 1821 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 TRIM43BA6NCK2 446 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 HIP1O00291 1037 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 ALAS1P13196 640 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 GJA9P57773 515 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 NKX3-2P78367 333 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 KCNA10Q16322 511 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 CCDC96Q2M329 555 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 CCDC174Q6PII3 467 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 DEFB123Q8N688 67 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 TRIM43Q96BQ3 446 aaPredicted RBP16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 CHMP4CQ96CF2 233 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 RANBP17Q9H2T7 1088 aaKnown RBP16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 PNMA2Q9UL42 364 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 ELP1O95163 1332 aa16.93■□□□□ 0.3
SNRNP40-203ENST00000463988 MCM3APO60318 1980 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 SOWAHBA6NEL2 793 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 KIAA0355O15063 1070 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 CLTBP09497 229 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 HAND2P61296 217 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 FAM109BQ6ICB4 259 aaPredicted RBP16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 RASGRP2Q7LDG7 609 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 SH3RF1Q7Z6J0 888 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 BADQ92934 168 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 STARD7Q9NQZ5 370 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 CYP39A1Q9NYL5 469 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 CCPG1Q9ULG6 757 aa16.92■□□□□ 0.3
SNRNP40-203ENST00000463988 ADCY6O43306 1168 aa16.91■□□□□ 0.3
SNRNP40-203ENST00000463988 C6orf222P0C671 652 aaPredicted RBP16.91■□□□□ 0.3
SNRNP40-203ENST00000463988 SNAP25P60880 206 aa16.91■□□□□ 0.3
SNRNP40-203ENST00000463988 MUM1L1Q5H9M0 696 aa16.91■□□□□ 0.3
SNRNP40-203ENST00000463988 SYDE2Q5VT97 1194 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms