RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PLCB4Q15147 1175 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 PUM3Q15397 648 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 LRRC8CQ8TDW0 803 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 ERVK-7P63135 1459 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 KLF18A0A0U1RQI7 1052 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 HARSP12081 509 aaKnown RBP14.54□□□□□ -0.08
USP40-208ENST00000450966 TBC1D8BQ0IIM8 1120 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 GJC2Q5T442 439 aaPredicted RBP14.54□□□□□ -0.08
USP40-208ENST00000450966 C6orf118Q5T5N4 469 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 MYLK4Q86YV6 388 aaPredicted RBP14.54□□□□□ -0.08
USP40-208ENST00000450966 MFN1Q8IWA4 741 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 PIP4K2CQ8TBX8 421 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 DESI2Q9BSY9 194 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 SLC5A4Q9NY91 659 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 FAM135BQ49AJ0 1406 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 VTI1AQ96AJ9 217 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 RILPQ96NA2 401 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 TRIM31Q9BZY9 425 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 PDCLQ13371 301 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 TRIM42Q8IWZ5 723 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 HELLSQ9NRZ9 838 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 SBNO2Q9Y2G9 1366 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 KRT10P13645 584 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 PPARDQ03181 441 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 Q6ZUG5 572 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 CCDC13Q8IYE1 715 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 UBL4BQ8N7F7 174 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 RHBDL2Q9NX52 303 aa14.54□□□□□ -0.08
USP40-208ENST00000450966 RTN1Q16799 776 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 HELBQ8NG08 1087 aaPredicted RBP14.53□□□□□ -0.08
USP40-208ENST00000450966 C6orf50Q9HD87 102 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 MROH5Q6ZUA9 1318 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 KRT27Q7Z3Y8 459 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 KIFAP3Q92845 792 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 DCTPP1Q9H773 170 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 RGL1Q9NZL6 768 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 MCM7P33993 719 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 SCRN1Q12765 414 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 VPS16Q9H269 839 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 TBC1D23Q9NUY8 699 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 ESRRBO95718 433 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 LMNB1P20700 586 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 NMIQ13287 307 aaPredicted RBP14.53□□□□□ -0.08
USP40-208ENST00000450966 LLPHQ9BRT6 129 aaKnown RBP14.53□□□□□ -0.08
USP40-208ENST00000450966 PAPOLBQ9NRJ5 636 aaKnown RBP14.53□□□□□ -0.08
USP40-208ENST00000450966 STK24Q9Y6E0 443 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 ANKARQ7Z5J8 1434 aa14.53□□□□□ -0.08
USP40-208ENST00000450966 F8W031 263 aaPredicted RBP14.52□□□□□ -0.08
USP40-208ENST00000450966 CCND1P24385 295 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 YY1P25490 414 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 NLRP14Q86W24 1093 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 TEKT4Q8WW24 435 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 HIC2Q96JB3 615 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 HAUS8Q9BT25 410 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 MOV10L1Q9BXT6 1211 aaKnown RBP14.52□□□□□ -0.08
USP40-208ENST00000450966 FGFR1OP2Q9NVK5 253 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 PABPC4Q13310 644 aaKnown RBP eCLIP14.52□□□□□ -0.08
USP40-208ENST00000450966 SLC9C2Q5TAH2 1124 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 RUNDC3BQ96NL0 473 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 TESK2Q96S53 571 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 C10orf88Q9H8K7 445 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 PAG1Q9NWQ8 432 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 RNF113AO15541 343 aaKnown RBP14.52□□□□□ -0.08
USP40-208ENST00000450966 PICALMQ13492 652 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 LGSNQ5TDP6 509 aa14.52□□□□□ -0.08
USP40-208ENST00000450966 RNASE9P60153 205 aaKnown RBP14.52□□□□□ -0.09
USP40-208ENST00000450966 ARID5AQ03989 594 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 SLC35F6Q8N357 371 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 IFIH1Q9BYX4 1025 aaKnown RBP14.52□□□□□ -0.09
USP40-208ENST00000450966 TXNDC16Q9P2K2 825 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 ARIH1Q9Y4X5 557 aaPredicted RBP14.52□□□□□ -0.09
USP40-208ENST00000450966 PTPDC1A2A3K4 754 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 GMNCA6NCL1 334 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 ZNF189O75820 626 aaPredicted RBP14.52□□□□□ -0.09
USP40-208ENST00000450966 ZNF202O95125 648 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 EIF3BP55884 814 aaKnown RBP14.52□□□□□ -0.09
USP40-208ENST00000450966 OR8K1Q8NGG5 319 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 KIAA1468Q9P260 1216 aa14.52□□□□□ -0.09
USP40-208ENST00000450966 ERCC5P28715 1186 aaPredicted RBP14.51□□□□□ -0.09
USP40-208ENST00000450966 RAD23BP54727 409 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 KIF22Q14807 665 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 LONRF3Q496Y0 759 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 KRT80Q6KB66 452 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 IQUBQ8NA54 791 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 JARID2Q92833 1246 aaPredicted RBP14.51□□□□□ -0.09
USP40-208ENST00000450966 INTUQ9ULD6 942 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 ZNF148Q9UQR1 794 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 HEATR3Q7Z4Q2 680 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 IMPG2Q9BZV3 1241 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 TUBA8Q9NY65 449 aaPredicted RBP14.51□□□□□ -0.09
USP40-208ENST00000450966 IVNS1ABPQ9Y6Y0 642 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 INSRP06213 1382 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 RIMBP2O15034 1052 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 IL13P35225 146 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 CC2D2BQ6DHV5 1058 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 EP400NLQ6ZTU2 488 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 SH3GL2Q99962 352 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 NOC4LQ9BVI4 516 aaKnown RBP14.51□□□□□ -0.09
USP40-208ENST00000450966 AS3MTQ9HBK9 375 aa14.51□□□□□ -0.09
USP40-208ENST00000450966 PREX2Q70Z35 1606 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms