RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 USP25Q9UHP3 1055 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ARHGEF37A1IGU5 675 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ADCYAP1R1P41586 468 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 NDUFV1P49821 464 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 MNAT1P51948 309 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ENOX2Q16206 610 aaKnown RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 MPP4Q96JB8 637 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 RPAP3Q9H6T3 665 aaPredicted RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 RMI1Q9H9A7 625 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ATP8A2Q9NTI2 1148 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 SSX2IPQ9Y2D8 614 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 CTAGE5O15320 804 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 MCTP2Q6DN12 878 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 OR6J1Q8NGC5 347 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 KIF2CQ99661 725 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 ZHX3Q9H4I2 956 aa9.19□□□□□ -0.94
LIMS1-203ENST00000393310 MRPS17Q9Y2R5 130 aaKnown RBP9.19□□□□□ -0.94
LIMS1-203ENST00000393310 UTYO14607 1347 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 C22orf23Q9BZE7 217 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 IQCGQ9H095 443 aaKnown RBP9.18□□□□□ -0.94
LIMS1-203ENST00000393310 PHAXQ9H814 394 aaKnown RBP9.18□□□□□ -0.94
LIMS1-203ENST00000393310 NCDNQ9UBB6 729 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 CCPG1Q9ULG6 757 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 CEMIPQ8WUJ3 1361 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 GH2P01242 217 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 ATICP31939 592 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 FAM109BQ6ICB4 259 aaPredicted RBP9.18□□□□□ -0.94
LIMS1-203ENST00000393310 HLA-CQ95604 372 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 NUP188Q5SRE5 1749 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 ARHGEF28Q8N1W1 1705 aaKnown RBP9.18□□□□□ -0.94
LIMS1-203ENST00000393310 CC2D1AQ6P1N0 951 aaPredicted RBP9.18□□□□□ -0.94
LIMS1-203ENST00000393310 GMEB2Q9UKD1 530 aa9.18□□□□□ -0.94
LIMS1-203ENST00000393310 CYP2E1P05181 493 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 CYP2C8P10632 490 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 INPP5BP32019 993 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 CAP2P40123 477 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 SLC9C2Q5TAH2 1124 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 RWDD1Q9H446 243 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 PPME1Q9Y570 386 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 NUB1Q9Y5A7 615 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 EMSYQ7Z589 1322 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 A0A1B0GUL7 405 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 DYNC1LI2O43237 492 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 MAGEA10P43363 369 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 CCDC85BQ15834 202 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 ARHGEF16Q5VV41 709 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 RPAP2Q8IXW5 612 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 MAGEB6Q8N7X4 407 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 ESR2Q92731 530 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 TSR2Q969E8 191 aaKnown RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 HIPK3Q9H422 1215 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 STK39Q9UEW8 545 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 RSPH14Q9UHP6 348 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 TNRC6CQ9HCJ0 1690 aaKnown RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 BACH1O14867 736 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 ATP2A2P16615 1042 aaKnown RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 CACNB3P54284 484 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 RCSD1Q6JBY9 416 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 LEKR1Q6ZMV7 388 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 HS6ST3Q8IZP7 471 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 ATOH1Q92858 354 aaPredicted RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 WDR18Q9BV38 432 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 SHTN1A0MZ66 631 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 AMPD2Q01433 879 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 SF3A1Q15459 793 aaKnown RBP9.17□□□□□ -0.94
LIMS1-203ENST00000393310 FAM160B1Q5W0V3 765 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 SCFD2Q8WU76 684 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 GLG1Q92896 1179 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 XAGE2Q96GT9 111 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 SNRKQ9NRH2 765 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 PRDM4Q9UKN5 801 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 DAGLAQ9Y4D2 1042 aa9.17□□□□□ -0.94
LIMS1-203ENST00000393310 FOXD2O60548 495 aaPredicted RBP9.16□□□□□ -0.94
LIMS1-203ENST00000393310 SNRNP48Q6IEG0 339 aaKnown RBP9.16□□□□□ -0.94
LIMS1-203ENST00000393310 RIPOR3Q96MK2 946 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 INO80BQ9C086 356 aaPredicted RBP9.16□□□□□ -0.94
LIMS1-203ENST00000393310 MAGEC2Q9UBF1 373 aaPredicted RBP9.16□□□□□ -0.94
LIMS1-203ENST00000393310 SPDYE3A6NKU9 549 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 KIAA0754O94854 1291 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 TLE2Q04725 743 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 NUDT18Q6ZVK8 323 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 ABRAQ8N0Z2 381 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 ELMOD1Q8N336 334 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 SPOCK3Q9BQ16 436 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 ARHGAP39Q9C0H5 1083 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 ZBTB21Q9ULJ3 1066 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 MYO6Q9UM54 1294 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 IKBKGQ9Y6K9 419 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 CRYBG1Q9Y4K1 1723 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 ABCD1P33897 745 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 PTPN5P54829 565 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 SLFN13Q68D06 897 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 CHST3Q7LGC8 479 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 GPR142Q7Z601 462 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 YAF2Q8IY57 180 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 FIBCD1Q8N539 461 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 SHDQ96IW2 340 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 HOMER2Q9NSB8 354 aa9.16□□□□□ -0.94
LIMS1-203ENST00000393310 TRPM3Q9HCF6 1732 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms