RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LONP1P36776 959 aaKnown RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 TXKP42681 527 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 PAK1Q13153 545 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 SHROOM1Q2M3G4 852 aaPredicted RBP11.68□□□□□ -0.54
LIMA1-201ENST00000341247 NAALADL2Q58DX5 795 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 TBCKQ8TEA7 893 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 ANKS1AQ92625 1134 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 HPS3Q969F9 1004 aa11.68□□□□□ -0.54
LIMA1-201ENST00000341247 NAV1Q8NEY1 1877 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 AKR1B15C9JRZ8 316 aaPredicted RBP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 RBM5P52756 815 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 KRT31Q15323 416 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 FILIP1LQ4L180 1135 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 TTBK2Q6IQ55 1244 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 APTXQ7Z2E3 356 aaKnown RBP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 ADD3Q9UEY8 706 aaKnown RBP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 M0R2N6 131 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 ERCC3P19447 782 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 PMS1P54277 932 aaKnown RBP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 CCDC178Q5BJE1 867 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 WDR24Q96S15 920 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 SH3GLB2Q9NR46 395 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 TCP11L1Q9NUJ3 509 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 PLCG1P19174 1290 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 NFIAQ12857 509 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 NONOQ15233 471 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMA1-201ENST00000341247 CCDC96Q2M329 555 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 KMT5BQ4FZB7 885 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 TRIM65Q6PJ69 517 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 KIAA0825Q8IV33 1275 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 C6orf50Q9HD87 102 aa11.67□□□□□ -0.54
LIMA1-201ENST00000341247 ROBO3Q96MS0 1386 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 KIF2AO00139 706 aaPredicted RBP11.66□□□□□ -0.54
LIMA1-201ENST00000341247 UBE2SQ16763 222 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 ARL6IP4Q66PJ3 421 aaKnown RBP11.66□□□□□ -0.54
LIMA1-201ENST00000341247 KCTD1Q719H9 257 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 POTEDQ86YR6 584 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 ZFPM1Q8IX07 1006 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 SLF2Q8IX21 1173 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 TBC1D22AQ8WUA7 517 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 EPC1Q9H2F5 836 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 ZSCAN12O43309 604 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 PDHBP11177 359 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 FXR1P51114 621 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMA1-201ENST00000341247 CABP7Q86V35 215 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 GPIHBP1Q8IV16 184 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 ZSWIM4Q9H7M6 989 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 MRPL44Q9H9J2 332 aaKnown RBP11.66□□□□□ -0.54
LIMA1-201ENST00000341247 LRRC37AA6NMS7 1700 aa11.66□□□□□ -0.54
LIMA1-201ENST00000341247 KCNJ18B7U540 433 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 RNF225M0QZC1 329 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 MYO1BO43795 1136 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 TNNI2P48788 182 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 KCNJ12Q14500 433 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 CDKAL1Q5VV42 579 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 C15orf52Q6ZUT6 534 aaKnown RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 NUP88Q99567 741 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 PDGFDQ9GZP0 370 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 IGSF3O75054 1194 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 OR52Z1P0C646 297 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ZNF658Q5TYW1 1059 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 RAD9BQ6WBX8 426 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ZSCAN29Q8IWY8 852 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 REXO1Q8N1G1 1221 aaKnown RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 CARD6Q9BX69 1037 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ZMYND12Q9H0C1 365 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 MTMR4Q9NYA4 1195 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 KLRG2A4D1S0 409 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-201ENST00000341247 STX10O60499 249 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 MMP10P09238 476 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ASIC1P78348 528 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 UBXN1Q04323 297 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 NEK8Q86SG6 692 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ZBTB9Q96C00 473 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 ERO1AQ96HE7 468 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 TRIM47Q96LD4 638 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 SPZ1Q9BXG8 430 aa11.65□□□□□ -0.54
LIMA1-201ENST00000341247 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.65□□□□□ -0.544e-6■■■■□ 22
LIMA1-201ENST00000341247 TDP2O95551 362 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 GNA11P29992 359 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 HOXA10P31260 410 aaPredicted RBP11.64□□□□□ -0.55
LIMA1-201ENST00000341247 COPB1P53618 953 aaKnown RBP11.64□□□□□ -0.55
LIMA1-201ENST00000341247 FBXO38Q6PIJ6 1188 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 MNS1Q8NEH6 495 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 CRAMP1Q96RY5 1269 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 SRRTQ9BXP5 876 aaKnown RBP11.64□□□□□ -0.55
LIMA1-201ENST00000341247 KCND1Q9NSA2 647 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 PODXL2Q9NZ53 605 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 ATP6V0A2Q9Y487 856 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 CCP110O43303 1012 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 GYPCP04921 128 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 FCER1AP12319 257 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 DYMQ7RTS9 669 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 SP8Q8IXZ3 490 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 ACRBPQ8NEB7 543 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 SERPINB13Q9UIV8 391 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 SCN9AQ15858 1988 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 NRXN2Q9P2S2 1712 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 GAKO14976 1311 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 POTEMA6NI47 508 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms