RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ACAD9Q9H845 621 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 XPNPEP3Q9NQH7 507 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 TOMM22Q9NS69 142 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 PRR12Q9ULL5 1215 aa20.94■□□□□ 0.94
HDDC3-201ENST00000330334 SLC4A3P48751 1232 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 RRP12Q5JTH9 1297 aaKnown RBP20.93■□□□□ 0.94
HDDC3-201ENST00000330334 CWC27Q6UX04 472 aaKnown RBP20.93■□□□□ 0.94
HDDC3-201ENST00000330334 RNF180Q86T96 592 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 TMEM47Q9BQJ4 181 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 ABHD16BQ9H3Z7 469 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 DIAPH3Q9NSV4 1193 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 FAM184BQ9ULE4 1060 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 ISY1Q9ULR0 285 aaKnown RBP20.93■□□□□ 0.94
HDDC3-201ENST00000330334 PHF24Q9UPV7 400 aa20.93■□□□□ 0.94
HDDC3-201ENST00000330334 ZNF213O14771 459 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 HAND2P61296 217 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 FAM133AQ8N9E0 248 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 FGD4Q96M96 766 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 AGBL1Q96MI9 1066 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 DSCC1Q9BVC3 393 aa20.92■□□□□ 0.94
HDDC3-201ENST00000330334 SMCHD1A6NHR9 2005 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 ADCYAP1R1P41586 468 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 ATN1P54259 1190 aaPredicted RBP20.91■□□□□ 0.94
HDDC3-201ENST00000330334 RTP1P59025 263 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 ACVR2BQ13705 512 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 ESR2Q92731 530 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 TRERF1Q96PN7 1200 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 TSEN34Q9BSV6 310 aaKnown RBP20.91■□□□□ 0.94
HDDC3-201ENST00000330334 RNF146Q9NTX7 359 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 PLXNA1Q9UIW2 1896 aa20.91■□□□□ 0.94
HDDC3-201ENST00000330334 DUSP11O75319 330 aaKnown RBP20.9■□□□□ 0.94
HDDC3-201ENST00000330334 ICAM1P05362 532 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 CCDC178Q5BJE1 867 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 DGKHQ86XP1 1220 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 TBC1D10CQ8IV04 446 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 RANBP17Q9H2T7 1088 aaKnown RBP20.9■□□□□ 0.94
HDDC3-201ENST00000330334 A1CFQ9NQ94 594 aaKnown RBP20.9■□□□□ 0.94
HDDC3-201ENST00000330334 HOMER2Q9NSB8 354 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.9■□□□□ 0.94
HDDC3-201ENST00000330334 PNMA2Q9UL42 364 aa20.9■□□□□ 0.94
HDDC3-201ENST00000330334 POTEB2H3BUK9 544 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 ADAMTS4O75173 837 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 PGK1P00558 417 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 SNHG28P0DPA3 235 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 PDHBP11177 359 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 CCDC96Q2M329 555 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 LRIT3Q3SXY7 679 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 TDHQ8IZJ6 230 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 KLHDC9Q8NEP7 349 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 UBE2OQ9C0C9 1292 aaKnown RBP20.89■□□□□ 0.93
HDDC3-201ENST00000330334 CTNNA3Q9UI47 895 aa20.89■□□□□ 0.93
HDDC3-201ENST00000330334 MYCNP04198 464 aaPredicted RBP20.88■□□□□ 0.93
HDDC3-201ENST00000330334 ALAS1P13196 640 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 GPR153Q6NV75 609 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 ARMCX2Q7L311 632 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 CCDC144CPQ8IYA2 1237 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 ANKS1AQ92625 1134 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 CHMP4CQ96CF2 233 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 PRKAG2Q9UGJ0 569 aa20.88■□□□□ 0.93
HDDC3-201ENST00000330334 ZHX1Q9UKY1 873 aaPredicted RBP20.88■□□□□ 0.93
HDDC3-201ENST00000330334 ASB14A6NK59 587 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 PDE4AP27815 886 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 CNTN2Q02246 1040 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 SYDE2Q5VT97 1194 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 TTBK2Q6IQ55 1244 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 CCDC174Q6PII3 467 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 RASGRP2Q7LDG7 609 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 LBHD1Q9BQE6 289 aaPredicted RBP20.87■□□□□ 0.93
HDDC3-201ENST00000330334 KATNBL1Q9H079 304 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 CCPG1Q9ULG6 757 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 ATP11BQ9Y2G3 1177 aa20.87■□□□□ 0.93
HDDC3-201ENST00000330334 MOXD2PA6NHM9 499 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 CST5P28325 142 aaPredicted RBP20.86■□□□□ 0.93
HDDC3-201ENST00000330334 NKX3-2P78367 333 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 ZNF543Q08ER8 600 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 IMMTQ16891 758 aaKnown RBP20.86■□□□□ 0.93
HDDC3-201ENST00000330334 CCDC144BQ3MJ40 725 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 TTC22Q5TAA0 569 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 CCSAPQ6IQ19 270 aaPredicted RBP20.86■□□□□ 0.93
HDDC3-201ENST00000330334 IQCA1Q86XH1 822 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 FERMT2Q96AC1 680 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 CYP39A1Q9NYL5 469 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 MTMR7Q9Y216 660 aa20.86■□□□□ 0.93
HDDC3-201ENST00000330334 NEDD4P46934 1319 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 SYNRGQ9UMZ2 1314 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 SOWAHBA6NEL2 793 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 SOX1O00570 391 aaPredicted RBP20.85■□□□□ 0.93
HDDC3-201ENST00000330334 SLC16A2P36021 539 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 SNAP25P60880 206 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 MDM2Q00987 491 aaPredicted RBP20.85■□□□□ 0.93
HDDC3-201ENST00000330334 TRIM60Q495X7 471 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 MUM1L1Q5H9M0 696 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 GPATCH4Q5T3I0 446 aaKnown RBP20.85■□□□□ 0.93
HDDC3-201ENST00000330334 NUP133Q8WUM0 1156 aa20.85■□□□□ 0.93
HDDC3-201ENST00000330334 UPF3AQ9H1J1 476 aaKnown RBP20.85■□□□□ 0.93
HDDC3-201ENST00000330334 LOC102724159A0A0B4J2E5 919 aa20.84■□□□□ 0.93
HDDC3-201ENST00000330334 A0A1W2PQ45 241 aaPredicted RBP20.84■□□□□ 0.93
HDDC3-201ENST00000330334 A0A1W2PQY0 241 aa20.84■□□□□ 0.93
HDDC3-201ENST00000330334 GSPT1P15170 499 aaKnown RBP20.84■□□□□ 0.93
HDDC3-201ENST00000330334 ACLYP53396 1101 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms