RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 STIM1Q13586 685 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 TSR1Q2NL82 804 aaKnown RBP24.68■■□□□ 1.54
SHMT1-201ENST00000316694 MAGEC2Q9UBF1 373 aaPredicted RBP24.68■■□□□ 1.54
SHMT1-201ENST00000316694 COL5A3P25940 1745 aaPredicted RBP24.68■■□□□ 1.54
SHMT1-201ENST00000316694 PSMA7O14818 248 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 AMPD2Q01433 879 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 PCDHA6Q9UN73 950 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 L1RE1Q9UN81 338 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 PCDHA8Q9Y5H6 950 aa24.68■■□□□ 1.54
SHMT1-201ENST00000316694 EEF1GP26641 437 aaKnown RBP24.67■■□□□ 1.54
SHMT1-201ENST00000316694 VPS18Q9P253 973 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 SRP68Q9UHB9 627 aaKnown RBP24.67■■□□□ 1.54
SHMT1-201ENST00000316694 KIAA1551Q9HCM1 1747 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 USP17L3A6NCW0 530 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 USP17L4A6NCW7 530 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 LMAN1P49257 510 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 USP17L1Q7RTZ2 530 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 HDAC6Q9UBN7 1215 aa24.67■■□□□ 1.54
SHMT1-201ENST00000316694 B4DLN1 442 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 KLRC4O43908 158 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 FAM98CQ17RN3 349 aaKnown RBP24.66■■□□□ 1.54
SHMT1-201ENST00000316694 DGKHQ86XP1 1220 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 TRERF1Q96PN7 1200 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 DNAJC7Q99615 494 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 THAP9Q9H5L6 903 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 MKNK2Q9HBH9 465 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 PDS5AQ29RF7 1337 aaKnown RBP24.66■■□□□ 1.54
SHMT1-201ENST00000316694 EIF3JO75822 258 aaKnown RBP24.66■■□□□ 1.54
SHMT1-201ENST00000316694 KCNB1Q14721 858 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 TXNRD3Q86VQ6 643 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 ZNF507Q8TCN5 953 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 RNF216Q9NWF9 866 aaPredicted RBP24.66■■□□□ 1.54
SHMT1-201ENST00000316694 MAD2L2Q9UI95 211 aa24.66■■□□□ 1.54
SHMT1-201ENST00000316694 A0A1W2PQC6 194 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 M0R2N6 131 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 ZBTB22O15209 634 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 N4BP1O75113 896 aaKnown RBP24.65■■□□□ 1.54
SHMT1-201ENST00000316694 CCDC122Q5T0U0 273 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 WDR59Q6PJI9 974 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 BARGINQ6ZT62 677 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 CCDC148Q8NFR7 591 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 HAUS4Q9H6D7 363 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 CAPN11Q9UMQ6 739 aa24.65■■□□□ 1.54
SHMT1-201ENST00000316694 HERVK_113P62684 666 aa24.64■■□□□ 1.54
SHMT1-201ENST00000316694 GRM4Q14833 912 aa24.64■■□□□ 1.54
SHMT1-201ENST00000316694 GIMAP8Q8ND71 665 aaPredicted RBP24.64■■□□□ 1.54
SHMT1-201ENST00000316694 EXOC4Q96A65 974 aa24.64■■□□□ 1.54
SHMT1-201ENST00000316694 RHOBTB3O94955 611 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 SLC35G1Q2M3R5 365 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 SLC10A5Q5PT55 438 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 C12orf60Q5U649 245 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 CSGALNACT2Q8N6G5 542 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 LRRC15Q8TF66 581 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 KBTBD4Q9NVX7 518 aa24.64■■□□□ 1.53
SHMT1-201ENST00000316694 CASP8Q14790 479 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 KIAA1328Q86T90 577 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 NLRP3Q96P20 1036 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 GBP3Q9H0R5 595 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 STX8Q9UNK0 236 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 CYTH3O43739 400 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 TSPY3P0CV98 308 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 TSPY8P0CW00 308 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 TRIM21P19474 475 aaKnown RBP24.63■■□□□ 1.53
SHMT1-201ENST00000316694 TTI2Q6NXR4 508 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 TUBGCP2Q9BSJ2 902 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 ANKRD2Q9GZV1 360 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 AGPAT5Q9NUQ2 364 aa24.63■■□□□ 1.53
SHMT1-201ENST00000316694 PSMD14O00487 310 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 ATP1A1P05023 1023 aaKnown RBP24.62■■□□□ 1.53
SHMT1-201ENST00000316694 GOLGA8HP0CJ92 632 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 GNAQP50148 359 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 DNM2P50570 870 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 TRAPPC11Q7Z392 1133 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 SLC51AQ86UW1 340 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 NBPF5PQ86XG9 351 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-201ENST00000316694 CCSER1Q9C0I3 900 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 EXOC1Q9NV70 894 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 CCDC88AQ3V6T2 1871 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 SRGAP2O75044 1071 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 PLCG1P19174 1290 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 KLK7P49862 253 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 CCDC178Q5BJE1 867 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 SLC44A5Q8NCS7 719 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 PCMTD1Q96MG8 357 aaPredicted RBP24.62■■□□□ 1.53
SHMT1-201ENST00000316694 SETDB2Q96T68 719 aa24.62■■□□□ 1.53
SHMT1-201ENST00000316694 STXBP3O00186 592 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 MYL1P05976 194 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 ZSCAN26Q16670 478 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 SH3RF3Q8TEJ3 882 aaPredicted RBP24.61■■□□□ 1.53
SHMT1-201ENST00000316694 CCDC102AQ96A19 550 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 BARHL2Q9NY43 387 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 CAPZA3Q96KX2 299 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 DUSP9Q99956 384 aaKnown RBP24.61■■□□□ 1.53
SHMT1-201ENST00000316694 CPVLQ9H3G5 476 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 SAR1BQ9Y6B6 198 aa24.61■■□□□ 1.53
SHMT1-201ENST00000316694 SRGNP10124 158 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 KRT83P78385 493 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 CABP7Q86V35 215 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 TCP11L1Q9NUJ3 509 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 FAN1Q9Y2M0 1017 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms