RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SMARCC2Q8TAQ2 1214 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 SLC4A9Q96Q91 983 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 MED23Q9ULK4 1368 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 TMEM110-MUSTN1A8MSY1 372 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 CTIFO43310 598 aaKnown RBP17.06■□□□□ 0.32
SHH-201ENST00000297261 RBL2Q08999 1139 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 LMBR1Q8WVP7 490 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 RASAL2Q9UJF2 1139 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 EIF3CLB5ME19 914 aaKnown RBP17.05■□□□□ 0.32
SHH-201ENST00000297261 ATP2B4P23634 1241 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 ZNF654Q8IZM8 581 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 LRRC45Q96CN5 670 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 EIF3CQ99613 913 aaKnown RBP17.05■□□□□ 0.32
SHH-201ENST00000297261 TAF6LQ9Y6J9 622 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 KCNJ18B7U540 433 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 NTSR2O95665 410 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 SLFN14P0C7P3 912 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 KCNJ12Q14500 433 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 JPH2Q9BR39 696 aaPredicted RBP17.05■□□□□ 0.32
SHH-201ENST00000297261 NLRC4Q9NPP4 1024 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 POLR3EQ9NVU0 708 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 SERPINA10Q9UK55 444 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 CARMIL3Q8ND23 1372 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 PLEKHG2Q9H7P9 1386 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 MAGEA9P43362 315 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 CETN1Q12798 172 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 IFT88Q13099 833 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 LETM2Q2VYF4 491 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 GPR101Q96P66 508 aaPredicted RBP17.05■□□□□ 0.32
SHH-201ENST00000297261 LEMD3Q9Y2U8 911 aa17.05■□□□□ 0.32
SHH-201ENST00000297261 TNKSO95271 1327 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 TMEM132AQ24JP5 1023 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 NLGN1Q8N2Q7 840 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 LRRC27Q9C0I9 530 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 RBM28Q9NW13 759 aaKnown RBP17.04■□□□□ 0.32
SHH-201ENST00000297261 SEMA3EO15041 775 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PCK1P35558 622 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 NCAPH2Q6IBW4 605 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 H0YIN7 160 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 CYP2C19P33261 490 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PLCD1P51178 756 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 ZBTB16Q05516 673 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 NUP58Q9BVL2 599 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PPP1R12CQ9BZL4 782 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 TMEM232C9JQI7 657 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PEX19P40855 299 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 TFAP4Q01664 338 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 GRAPQ13588 217 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 E2F5Q15329 346 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PPP1R7Q15435 360 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 PTPROQ16827 1216 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 KRT79Q5XKE5 535 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 RRAGAQ7L523 313 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 CCDC26Q8TAB7 109 aa17.04■□□□□ 0.32
SHH-201ENST00000297261 GRAPLQ8TC17 118 aaPredicted RBP17.04■□□□□ 0.32
SHH-201ENST00000297261 STMN4Q9H169 189 aaPredicted RBP17.04■□□□□ 0.32
SHH-201ENST00000297261 TNS2Q63HR2 1409 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 FAM170AA1A519 330 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 APOA5Q6Q788 366 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 STOX1Q6ZVD7 989 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 GOLPH3LQ9H4A5 285 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 ZMYM6O95789 1325 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 PPFIA4O75335 1185 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 GCKP35557 465 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 AIFM3Q96NN9 605 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 ARPP21Q9UBL0 812 aaPredicted RBP17.03■□□□□ 0.32
SHH-201ENST00000297261 MTRF1LQ9UGC7 380 aaKnown RBP17.03■□□□□ 0.32
SHH-201ENST00000297261 MORC3Q14149 939 aa17.03■□□□□ 0.32
SHH-201ENST00000297261 ZNF772Q68DY9 489 aaPredicted RBP17.03■□□□□ 0.32
SHH-201ENST00000297261 OSBPL5Q9H0X9 879 aaPredicted RBP17.03■□□□□ 0.32
SHH-201ENST00000297261 ALDH1B1P30837 517 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 SYCP3Q8IZU3 236 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 RPSAP08865 295 aaKnown RBP17.02■□□□□ 0.32
SHH-201ENST00000297261 CTNNA2P26232 953 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 ARID4AP29374 1257 aaPredicted RBP17.02■□□□□ 0.32
SHH-201ENST00000297261 NFIXQ14938 502 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 SLC9C1Q4G0N8 1177 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 TRIM58Q8NG06 486 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 TBC1D22AQ8WUA7 517 aa17.02■□□□□ 0.32
SHH-201ENST00000297261 CYP2D7A0A087X1C5 515 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 GOLGA8KD6RF30 607 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 MAP3K9P80192 1104 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 E4F1Q66K89 784 aaPredicted RBP17.02■□□□□ 0.31
SHH-201ENST00000297261 CCDC50Q8IVM0 306 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 CCDC77Q9BR77 488 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 TOGARAM2Q6ZUX3 1019 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 TBC1D10CQ8IV04 446 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 TRIML1Q8N9V2 468 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 ZSCAN10Q96SZ4 725 aaPredicted RBP17.02■□□□□ 0.31
SHH-201ENST00000297261 ZSWIM5Q9P217 1185 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 CEP83Q9Y592 693 aa17.02■□□□□ 0.31
SHH-201ENST00000297261 PDE6BP35913 854 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 DOK7Q18PE1 504 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 ARMCX5Q6P1M9 558 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 CACNA2D3Q8IZS8 1091 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 CPSF2Q9P2I0 782 aaKnown RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 BUB1O43683 1085 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 TBCAO75347 108 aaKnown RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 POTEJP0CG39 1038 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 MRPS25P82663 173 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms