RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 DTHD1Q6ZMT9 781 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 POTEB2H3BUK9 544 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 BAG3O95817 575 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 USP5P45974 858 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 FXR1P51114 621 aaKnown RBP eCLIP15.22■□□□□ 0.03
SHMT2-222ENST00000555774 PPP4CP60510 307 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 CPLX3Q8WVH0 158 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 CCSER1Q9C0I3 900 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 CUEDC2Q9H467 287 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 IL17RBQ9NRM6 502 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 ABHD10Q9NUJ1 306 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 ZHX1Q9UKY1 873 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-222ENST00000555774 LEMD3Q9Y2U8 911 aa15.22■□□□□ 0.03
SHMT2-222ENST00000555774 FAM205AQ6ZU69 1335 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 ZPR1O75312 459 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 LDHBP07195 334 aaKnown RBP15.21■□□□□ 0.03
SHMT2-222ENST00000555774 USP17L8P0C7I0 530 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 SRGAP1Q7Z6B7 1085 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 ADSSL1Q8N142 457 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 NOC3LQ8WTT2 800 aaKnown RBP15.21■□□□□ 0.03
SHMT2-222ENST00000555774 STAMQ92783 540 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 MAD2L2Q9UI95 211 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 CDC23Q9UJX2 597 aa15.21■□□□□ 0.03
SHMT2-222ENST00000555774 A0A1W2PQC6 194 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 EEF1GP26641 437 aaKnown RBP15.21■□□□□ 0.02
SHMT2-222ENST00000555774 TM4SF1P30408 202 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 CCT6AP40227 531 aaKnown RBP15.21■□□□□ 0.02
SHMT2-222ENST00000555774 STIM1Q13586 685 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 TEX35Q5T0J7 233 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 CC2D1AQ6P1N0 951 aaPredicted RBP15.21■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF287Q9HBT7 754 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 LZTFL1Q9NQ48 299 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 BARHL2Q9NY43 387 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 PCDHA6Q9UN73 950 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 PCDHA8Q9Y5H6 950 aa15.21■□□□□ 0.02
SHMT2-222ENST00000555774 LDHCP07864 332 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 VEGFAP15692 232 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-222ENST00000555774 PLA2G4AP47712 749 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 AK8Q96MA6 479 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 THAP9Q9H5L6 903 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 MKNK2Q9HBH9 465 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 TSPY3P0CV98 308 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 TSPY8P0CW00 308 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 PRCPP42785 496 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 BRD3Q15059 726 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 C15orf52Q6ZUT6 534 aaKnown RBP15.2■□□□□ 0.02
SHMT2-222ENST00000555774 GPKOWQ92917 476 aaPredicted RBP eCLIP15.2■□□□□ 0.02
SHMT2-222ENST00000555774 NUP88Q99567 741 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-222ENST00000555774 TAB2Q9NYJ8 693 aa15.2■□□□□ 0.02
SHMT2-222ENST00000555774 CTAGE9A4FU28 777 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 STXBP3O00186 592 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 ADAMTS3O15072 1205 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 RHOBTB3O94955 611 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 PPP1R2P41236 205 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 CHMP4BP1P59074 171 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 ORC2Q13416 577 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-222ENST00000555774 NAALADL2Q58DX5 795 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF444Q8N0Y2 327 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-222ENST00000555774 STAG2Q8N3U4 1231 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 UBXN6Q9BZV1 441 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 VPS16Q9H269 839 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 ARFGAP3Q9NP61 516 aa15.19■□□□□ 0.02
SHMT2-222ENST00000555774 CCDC151A5D8V7 595 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 PALM3A6NDB9 673 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 UBA7P41226 1012 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 ERVK-24P63145 666 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 TAF3Q5VWG9 929 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 TXNRD3Q86VQ6 643 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 SH3RF3Q8TEJ3 882 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 SPZ1Q9BXG8 430 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 PARD6BQ9BYG5 372 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 KBTBD4Q9NVX7 518 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 SRP68Q9UHB9 627 aaKnown RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 LGALS16A8MUM7 142 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 PSMA7O14818 248 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 PARP1P09874 1014 aaKnown RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 SMARCA1P28370 1054 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 WHAMMP3Q1A5X7 153 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF569Q5MCW4 686 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 TYW1BQ6NUM6 668 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 KRT25Q7Z3Z0 450 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 CCDC47Q96A33 483 aaKnown RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 DHTKD1Q96HY7 919 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-222ENST00000555774 GDAQ9Y2T3 454 aa15.18■□□□□ 0.02
SHMT2-222ENST00000555774 TBC1D8O95759 1140 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 UBXN1Q04323 297 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 GRAPQ13588 217 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 ZNF804AQ7Z570 1209 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 MB21D1Q8N884 522 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 GIMAP8Q8ND71 665 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 RASSF8Q8NHQ8 419 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 GRAPLQ8TC17 118 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 NAPGQ99747 312 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 RTCBQ9Y3I0 505 aaKnown RBP15.17■□□□□ 0.02
SHMT2-222ENST00000555774 NAV1Q8NEY1 1877 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 GNPATO15228 680 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 KLRC4O43908 158 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 TUBBP07437 444 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 KRT9P35527 623 aa15.17■□□□□ 0.02
SHMT2-222ENST00000555774 KIF4BQ2VIQ3 1234 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms