RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZNF214Q9UL59 606 aaPredicted RBP20.34■□□□□ 0.85
VPS29-204ENST00000548259 CDH23Q9H251 3354 aa20.34■□□□□ 0.85
VPS29-204ENST00000548259 NAV1Q8NEY1 1877 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 FAM83BQ5T0W9 1011 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 AKNAD1Q5T1N1 836 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 KLHDC9Q8NEP7 349 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 SLF1Q9BQI6 1058 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 TBX21Q9UL17 535 aa20.33■□□□□ 0.85
VPS29-204ENST00000548259 USP17L12C9JPN9 530 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 USP17L21D6R901 530 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 APBB1O00213 710 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 C6orf222P0C671 652 aaPredicted RBP20.32■□□□□ 0.84
VPS29-204ENST00000548259 SNRNP48Q6IEG0 339 aaKnown RBP20.32■□□□□ 0.84
VPS29-204ENST00000548259 MAMDC4Q6UXC1 1216 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 ZNF467Q7Z7K2 595 aaPredicted RBP20.32■□□□□ 0.84
VPS29-204ENST00000548259 LENG1Q96BZ8 264 aaPredicted RBP20.32■□□□□ 0.84
VPS29-204ENST00000548259 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.32■□□□□ 0.84
VPS29-204ENST00000548259 PAG1Q9NWQ8 432 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 THEGQ9P2T0 379 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 MSRAQ9UJ68 235 aa20.32■□□□□ 0.84
VPS29-204ENST00000548259 A0A0U1RQG5 324 aaPredicted RBP20.31■□□□□ 0.84
VPS29-204ENST00000548259 ZBED4O75132 1171 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 HMMRO75330 724 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 COL9A1P20849 921 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 CST5P28325 142 aaPredicted RBP20.31■□□□□ 0.84
VPS29-204ENST00000548259 ADD2P35612 726 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 RAB30Q15771 203 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 ZSCAN25Q6NSZ9 544 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 USP38Q8NB14 1042 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 PPM1EQ8WY54 764 aa20.31■□□□□ 0.84
VPS29-204ENST00000548259 TSPYL2Q9H2G4 693 aaPredicted RBP20.31■□□□□ 0.84
VPS29-204ENST00000548259 PRKAB2O43741 272 aa20.3■□□□□ 0.84
VPS29-204ENST00000548259 ACVR2BQ13705 512 aa20.3■□□□□ 0.84
VPS29-204ENST00000548259 TMEM240Q5SV17 173 aa20.3■□□□□ 0.84
VPS29-204ENST00000548259 PRPF38AQ8NAV1 312 aaKnown RBP20.3■□□□□ 0.84
VPS29-204ENST00000548259 ABHD16BQ9H3Z7 469 aa20.3■□□□□ 0.84
VPS29-204ENST00000548259 FBXO40Q9UH90 709 aa20.3■□□□□ 0.84
VPS29-204ENST00000548259 ARVCFO00192 962 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 ASGR1P07306 291 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 MRPS5P82675 430 aaKnown RBP20.29■□□□□ 0.84
VPS29-204ENST00000548259 GNASQ5JWF2 1037 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 ANKRD35Q8N283 1001 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 REPS2Q8NFH8 660 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 PBX4Q9BYU1 374 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 BCL11AQ9H165 835 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 ARPP21Q9UBL0 812 aaPredicted RBP20.29■□□□□ 0.84
VPS29-204ENST00000548259 SLC4A4Q9Y6R1 1079 aa20.29■□□□□ 0.84
VPS29-204ENST00000548259 SNAI1O95863 264 aaPredicted RBP20.28■□□□□ 0.84
VPS29-204ENST00000548259 RLBP1P12271 317 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 CSF2RAP15509 400 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 SLC4A3P48751 1232 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 CDK7P50613 346 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 UBE3CQ15386 1083 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 CCSAPQ6IQ19 270 aaPredicted RBP20.28■□□□□ 0.84
VPS29-204ENST00000548259 ASB2Q96Q27 587 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 PRDM12Q9H4Q4 367 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 MKNK2Q9HBH9 465 aa20.28■□□□□ 0.84
VPS29-204ENST00000548259 DNAJC25-GNG10A0A024R161 153 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 CYP2D7A0A087X1C5 515 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 ATP2A1O14983 1001 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 RAB11FIP3O75154 756 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 MS4A1P11836 297 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 GJA9P57773 515 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 CPXCR1Q8N123 301 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 BOLA2Q9H3K6 86 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 SLC28A3Q9HAS3 691 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 ZNF287Q9HBT7 754 aa20.27■□□□□ 0.84
VPS29-204ENST00000548259 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.27■□□□□ 0.84
VPS29-204ENST00000548259 F5H6K3 240 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 IGFBP4P22692 258 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 KLRC3Q07444 240 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 CCDC144BQ3MJ40 725 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 RASIP1Q5U651 963 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 CTR9Q6PD62 1173 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 ZNF365Q70YC5 407 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 RPAP2Q8IXW5 612 aaPredicted RBP20.26■□□□□ 0.83
VPS29-204ENST00000548259 CHST13Q8NET6 341 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 SEZ6LQ9BYH1 1024 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 PPP1R12CQ9BZL4 782 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 UPF3AQ9H1J1 476 aaKnown RBP20.26■□□□□ 0.83
VPS29-204ENST00000548259 NYAP2Q9P242 653 aa20.26■□□□□ 0.83
VPS29-204ENST00000548259 CABYRO75952 493 aa20.25■□□□□ 0.83
VPS29-204ENST00000548259 ATP5JP18859 108 aa20.25■□□□□ 0.83
VPS29-204ENST00000548259 PBX2P40425 430 aa20.25■□□□□ 0.83
VPS29-204ENST00000548259 NOL8Q76FK4 1167 aaKnown RBP20.25■□□□□ 0.83
VPS29-204ENST00000548259 ADAMTS19Q8TE59 1207 aa20.25■□□□□ 0.83
VPS29-204ENST00000548259 IL23AQ9NPF7 189 aa20.25■□□□□ 0.83
VPS29-204ENST00000548259 SMCHD1A6NHR9 2005 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 MYADML2A6NDP7 307 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 GRXCR1A8MXD5 290 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 FGBP02675 491 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 ACRP10323 421 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 C16orf59Q7L2K0 433 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 FAM126BQ8IXS8 530 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 HERVK_113Q902F9 699 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 KIFC2Q96AC6 838 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 UHRF1Q96T88 793 aaPredicted RBP20.24■□□□□ 0.83
VPS29-204ENST00000548259 NUP88Q99567 741 aaPredicted RBP20.24■□□□□ 0.83
VPS29-204ENST00000548259 HAUS7Q99871 368 aa20.24■□□□□ 0.83
VPS29-204ENST00000548259 FEM1BQ9UK73 627 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms