RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 EVCP57679 992 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 CRHR2Q13324 411 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 RTN1Q16799 776 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 STAG2Q8N3U4 1231 aa16.96■□□□□ 0.3
BRCA1-223ENST00000494123 GTF3C2Q8WUA4 911 aaPredicted RBP16.96■□□□□ 0.3
BRCA1-223ENST00000494123 RBM28Q9NW13 759 aaKnown RBP16.96■□□□□ 0.3
BRCA1-223ENST00000494123 SPDYE16A6NNV3 312 aaPredicted RBP16.95■□□□□ 0.3
BRCA1-223ENST00000494123 PDIA3P30101 505 aaKnown RBP16.95■□□□□ 0.3
BRCA1-223ENST00000494123 GCLCP48506 637 aaPredicted RBP16.95■□□□□ 0.3
BRCA1-223ENST00000494123 GNAQP50148 359 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 SYDE2Q5VT97 1194 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 ATG4CQ96DT6 458 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 ZNF274Q96GC6 653 aaPredicted RBP16.95■□□□□ 0.3
BRCA1-223ENST00000494123 UBA5Q9GZZ9 404 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 SAGE1Q9NXZ1 904 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 RLFQ13129 1914 aa16.95■□□□□ 0.3
BRCA1-223ENST00000494123 CCDC196A0A1B0GTZ2 297 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 TBC1D8O95759 1140 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 STK3Q13188 491 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 PPP2R5BQ15173 497 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 BTNL9Q6UXG8 535 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 LZTS2Q9BRK4 669 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 PAGR1Q9BTK6 254 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 PRR12Q9ULL5 1215 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 TPCN1Q9ULQ1 816 aa16.94■□□□□ 0.3
BRCA1-223ENST00000494123 TLR2O60603 784 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 ZBED4O75132 1171 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 MB21D1Q8N884 522 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 JMYQ8N9B5 988 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 SLKQ9H2G2 1235 aaPredicted RBP16.93■□□□□ 0.3
BRCA1-223ENST00000494123 CPVLQ9H3G5 476 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 WBP1LQ9NX94 342 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 LIMCH1Q9UPQ0 1083 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 HPS5Q9UPZ3 1129 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 CEP350Q5VT06 3117 aa16.93■□□□□ 0.3
BRCA1-223ENST00000494123 VWA5AO00534 786 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 FDX1P10109 184 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 CCT2P78371 535 aaKnown RBP16.92■□□□□ 0.3
BRCA1-223ENST00000494123 LBX2Q6XYB7 198 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 CFHR5Q9BXR6 569 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 VAT1LQ9HCJ6 419 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 CPA4Q9UI42 421 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 A0A0G2JMZ2 1700 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 PLEKHA8P1O95397 391 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 TMTC3Q6ZXV5 915 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 ADGRF4Q8IZF3 695 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 ANKRD13CQ8N6S4 541 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 RABGAP1Q9Y3P9 1069 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 COL11A1P12107 1806 aaPredicted RBP16.92■□□□□ 0.3
BRCA1-223ENST00000494123 NID2Q14112 1375 aa16.92■□□□□ 0.3
BRCA1-223ENST00000494123 ADGRA2Q96PE1 1338 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 CPLX1O14810 134 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 CDC27P30260 824 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 MCM2P49736 904 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 PLS1Q14651 629 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 CMTR1Q8N1G2 835 aaKnown RBP16.91■□□□□ 0.3
BRCA1-223ENST00000494123 CCDC82Q8N4S0 544 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 ZSCAN31Q96LW9 406 aaPredicted RBP16.91■□□□□ 0.3
BRCA1-223ENST00000494123 SLC38A10Q9HBR0 1119 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 NCOA5Q9HCD5 579 aaKnown RBP16.91■□□□□ 0.3
BRCA1-223ENST00000494123 RBPJLQ9UBG7 517 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 ADAMTS5Q9UNA0 930 aa16.91■□□□□ 0.3
BRCA1-223ENST00000494123 PFKFB2O60825 505 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 ADD1P35611 737 aaKnown RBP16.9■□□□□ 0.3
BRCA1-223ENST00000494123 SNAP25P60880 206 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 ME3Q16798 604 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 FAM110CQ1W6H9 321 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 CCDC174Q6PII3 467 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 CPLX2Q6PUV4 134 aaKnown RBP16.9■□□□□ 0.3
BRCA1-223ENST00000494123 CPXCR1Q8N123 301 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 SRBD1Q8N5C6 995 aaKnown RBP16.9■□□□□ 0.3
BRCA1-223ENST00000494123 GPRC5AQ8NFJ5 357 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 SPZ1Q9BXG8 430 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 RANBP17Q9H2T7 1088 aaKnown RBP16.9■□□□□ 0.3
BRCA1-223ENST00000494123 JMJD4Q9H9V9 463 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 TXNRD2Q9NNW7 524 aa16.9■□□□□ 0.3
BRCA1-223ENST00000494123 SMARCA1P28370 1054 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 ERVK-9P63128 1117 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 ERVK-24P63145 666 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 CDC37Q16543 378 aaPredicted RBP16.89■□□□□ 0.29
BRCA1-223ENST00000494123 C17orf99Q6UX52 265 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 NBPF11Q86T75 865 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 HOMER1Q86YM7 354 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 PIBF1Q8WXW3 757 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 R3HDMLQ9H3Y0 253 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 RIOX1Q9H6W3 641 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 FAM217BQ9NTX9 383 aaPredicted RBP16.89■□□□□ 0.29
BRCA1-223ENST00000494123 BTBD7Q9P203 1132 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 MORF4L1Q9UBU8 362 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 TSKSQ9UJT2 592 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 MYH6P13533 1939 aa16.89■□□□□ 0.29
BRCA1-223ENST00000494123 PEX10O60683 326 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 LARGE1O95461 756 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 BCRP11274 1271 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 SLC4A3P48751 1232 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 CCNA1P78396 465 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 SCRN1Q12765 414 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 TMEM132BQ14DG7 1078 aa16.88■□□□□ 0.29
BRCA1-223ENST00000494123 CCAR1Q8IX12 1150 aaKnown RBP16.88■□□□□ 0.29
BRCA1-223ENST00000494123 RRP36Q96EU6 259 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms