RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 ATG4CQ96DT6 458 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 ZNF274Q96GC6 653 aaPredicted RBP18.33■□□□□ 0.52
HPS4-216ENST00000493455 PAGR1Q9BTK6 254 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 RBM28Q9NW13 759 aaKnown RBP18.33■□□□□ 0.52
HPS4-216ENST00000493455 THSD7BQ9C0I4 1608 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 RLFQ13129 1914 aa18.33■□□□□ 0.52
HPS4-216ENST00000493455 PALM3A6NDB9 673 aaPredicted RBP18.32■□□□□ 0.52
HPS4-216ENST00000493455 CPLX1O14810 134 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 MAP2K2P36507 400 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 TM4SF4P48230 202 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 COG2Q14746 738 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 SYDE2Q5VT97 1194 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 FAM160B2Q86V87 743 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 HOMER1Q86YM7 354 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 CCDC83Q8IWF9 413 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 HSCBQ8IWL3 235 aa18.32■□□□□ 0.52
HPS4-216ENST00000493455 ZSCAN31Q96LW9 406 aaPredicted RBP18.32■□□□□ 0.52
HPS4-216ENST00000493455 PARK7Q99497 189 aaKnown RBP18.32■□□□□ 0.52
HPS4-216ENST00000493455 P2RX7Q99572 595 aaKnown RBP18.32■□□□□ 0.52
HPS4-216ENST00000493455 PEX10O60683 326 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 PFKFB2O60825 505 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 ECM2O94769 699 aaPredicted RBP18.31■□□□□ 0.52
HPS4-216ENST00000493455 HOXA7P31268 230 aaPredicted RBP18.31■□□□□ 0.52
HPS4-216ENST00000493455 DSG3P32926 999 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 EVCP57679 992 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 SCRN1Q12765 414 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 CCDC174Q6PII3 467 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 TMTC3Q6ZXV5 915 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 NBPF11Q86T75 865 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 MAP3K14Q99558 947 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 PPP1R9AQ9ULJ8 1098 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 PRR12Q9ULL5 1215 aa18.31■□□□□ 0.52
HPS4-216ENST00000493455 CCDC196A0A1B0GTZ2 297 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 hCG_1642624A0A1W2PR95 340 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 SPDYE16A6NNV3 312 aaPredicted RBP18.3■□□□□ 0.52
HPS4-216ENST00000493455 MCM2P49736 904 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 GNAQP50148 359 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 RCAN1P53805 252 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 HERVK_113P62684 666 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 PLS1Q14651 629 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 ADGRF4Q8IZF3 695 aa18.3■□□□□ 0.52
HPS4-216ENST00000493455 SRBD1Q8N5C6 995 aaKnown RBP18.3■□□□□ 0.52
HPS4-216ENST00000493455 PRPF38AQ8NAV1 312 aaKnown RBP18.3■□□□□ 0.52
HPS4-216ENST00000493455 ZBED4O75132 1171 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 TRPA1O75762 1119 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 REM2Q8IYK8 340 aaPredicted RBP18.29■□□□□ 0.52
HPS4-216ENST00000493455 CPXCR1Q8N123 301 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 PHKBQ93100 1093 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 GTF3C6Q969F1 213 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 TMX3Q96JJ7 454 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 PIGSQ96S52 555 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 ZFYVE28Q9HCC9 887 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 SH2B1Q9NRF2 756 aaPredicted RBP18.29■□□□□ 0.52
HPS4-216ENST00000493455 FAM217BQ9NTX9 383 aaPredicted RBP18.29■□□□□ 0.52
HPS4-216ENST00000493455 HOXC10Q9NYD6 342 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 SLC45A1Q9Y2W3 748 aa18.29■□□□□ 0.52
HPS4-216ENST00000493455 TAL1P17542 331 aaPredicted RBP18.28■□□□□ 0.52
HPS4-216ENST00000493455 CRHR2Q13324 411 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 CDC37Q16543 378 aaPredicted RBP18.28■□□□□ 0.52
HPS4-216ENST00000493455 SLC35G1Q2M3R5 365 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 CPLX2Q6PUV4 134 aaKnown RBP18.28■□□□□ 0.52
HPS4-216ENST00000493455 BTNL9Q6UXG8 535 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 ANKRD13CQ8N6S4 541 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 LZTS2Q9BRK4 669 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 SLC26A6Q9BXS9 759 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 CPA4Q9UI42 421 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 A0A0G2JMZ2 1700 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 NID2Q14112 1375 aa18.28■□□□□ 0.52
HPS4-216ENST00000493455 CNTNAP5Q8WYK1 1306 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 K7ELQ4 463 aaPredicted RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 VWA5AO00534 786 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 CYTH3O43739 400 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 TBC1D8O95759 1140 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 ALDH1A1P00352 501 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 AKAP17AQ02040 695 aaKnown RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 ST3GAL1Q11201 340 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 PPP2R5BQ15173 497 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 IL27Q8NEV9 243 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 RRP36Q96EU6 259 aaKnown RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 BEGAINQ9BUH8 593 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 JMJD4Q9H9V9 463 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 RAVER2Q9HCJ3 691 aaKnown RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 ZCCHC17Q9NP64 241 aaKnown RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 TSHZ2Q9NRE2 1034 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 FOXD4L1Q9NU39 408 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 RNF186Q9NXI6 227 aa18.27■□□□□ 0.52
HPS4-216ENST00000493455 SEC63Q9UGP8 760 aaKnown RBP18.27■□□□□ 0.52
HPS4-216ENST00000493455 PLA2G6O60733 806 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 QRICH1Q2TAL8 776 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 USH1GQ495M9 461 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 DDX11Q96FC9 970 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 SPZ1Q9BXG8 430 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 TSKSQ9UJT2 592 aa18.26■□□□□ 0.51
HPS4-216ENST00000493455 MYPNQ86TC9 1320 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 SMCHD1A6NHR9 2005 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 CA12O43570 354 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 CDKL5O76039 1030 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 FOSBP53539 338 aa18.25■□□□□ 0.51
HPS4-216ENST00000493455 SSRP1Q08945 709 aaKnown RBP18.25■□□□□ 0.51
HPS4-216ENST00000493455 WDR78Q5VTH9 848 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms