RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CPVLQ9H3G5 476 aa14.38□□□□□ -0.11
PTPRF-213ENST00000481019 CNNM2Q9H8M5 875 aa14.38□□□□□ -0.11
PTPRF-213ENST00000481019 SLC38A10Q9HBR0 1119 aa14.38□□□□□ -0.11
PTPRF-213ENST00000481019 RAVER2Q9HCJ3 691 aaKnown RBP14.38□□□□□ -0.11
PTPRF-213ENST00000481019 GPCPD1Q9NPB8 672 aa14.38□□□□□ -0.11
PTPRF-213ENST00000481019 FLRT1Q9NZU1 646 aa14.38□□□□□ -0.11
PTPRF-213ENST00000481019 ISY1Q9ULR0 285 aaKnown RBP14.38□□□□□ -0.11
PTPRF-213ENST00000481019 MKI67P46013 3256 aaKnown RBP14.37□□□□□ -0.11
PTPRF-213ENST00000481019 GOLGA8HP0CJ92 632 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 SNHG28P0DPA3 235 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 GRB14Q14449 540 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 CCDC96Q2M329 555 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 PPP4R3BQ5MIZ7 849 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 NCAPG2Q86XI2 1143 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 DGKHQ86XP1 1220 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 NPLOC4Q8TAT6 608 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 DCAF4Q8WV16 495 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 TRIB2Q92519 343 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 UPF2Q9HAU5 1272 aaKnown RBP14.37□□□□□ -0.11
PTPRF-213ENST00000481019 PRR12Q9ULL5 1215 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 ZNF536O15090 1300 aa14.37□□□□□ -0.11
PTPRF-213ENST00000481019 SMCHD1A6NHR9 2005 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 COBLO75128 1261 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 INHAP05111 366 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 STAT3P40763 770 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 STAT2P52630 851 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 CCNA1P78396 465 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 ZNF543Q08ER8 600 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 IQCA1Q86XH1 822 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 RIOX2Q8IUF8 465 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 CCAR1Q8IX12 1150 aaKnown RBP14.36□□□□□ -0.11
PTPRF-213ENST00000481019 CPXCR1Q8N123 301 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 PNMA1Q8ND90 353 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 SHCBP1Q8NEM2 672 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 AGBL1Q96MI9 1066 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 NUDT12Q9BQG2 462 aa14.36□□□□□ -0.11
PTPRF-213ENST00000481019 SLC15A5A6NIM6 579 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 PLA2G6O60733 806 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 ZBED4O75132 1171 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 ADORA2AP29274 412 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 SLC4A3P48751 1232 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 IKQ13123 557 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-213ENST00000481019 MAP2K5Q13163 448 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 SNRNP48Q6IEG0 339 aaKnown RBP14.35□□□□□ -0.11
PTPRF-213ENST00000481019 CCDC174Q6PII3 467 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 BTNL9Q6UXG8 535 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 SLAIN1Q8ND83 568 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 NCOA7Q8NI08 942 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 IGDCC4Q8TDY8 1250 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 PXYLP1Q8TE99 480 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 BACH2Q9BYV9 841 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 UNC93B1Q9H1C4 597 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 ZNF236Q9UL36 1845 aa14.35□□□□□ -0.11
PTPRF-213ENST00000481019 ZNFX1Q9P2E3 1918 aaKnown RBP14.35□□□□□ -0.11
PTPRF-213ENST00000481019 RBBP6Q7Z6E9 1792 aaKnown RBP14.34□□□□□ -0.11
PTPRF-213ENST00000481019 KIAA0100Q14667 2235 aaKnown RBP14.34□□□□□ -0.11
PTPRF-213ENST00000481019 ATP2A1O14983 1001 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 IGHA2P01877 340 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 CCL5P13501 91 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 EN2P19622 333 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-213ENST00000481019 RGS2P41220 211 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 SLC35G1Q2M3R5 365 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 ADCK5Q3MIX3 580 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 SYDE2Q5VT97 1194 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 FAM160B2Q86V87 743 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 CHURC1Q8WUH1 139 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 SOCS4Q8WXH5 440 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 UBAC1Q9BSL1 405 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 TEX13BQ9BXU2 312 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 LRRC2Q9BYS8 371 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 UBA5Q9GZZ9 404 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 KAT14Q9H8E8 782 aa14.34□□□□□ -0.11
PTPRF-213ENST00000481019 CWC22Q9HCG8 908 aaKnown RBP14.34□□□□□ -0.11
PTPRF-213ENST00000481019 BIN2Q9UBW5 565 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-213ENST00000481019 IFIT3O14879 490 aaKnown RBP14.33□□□□□ -0.12
PTPRF-213ENST00000481019 PRC1O43663 620 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 SLC25A27O95847 323 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 PGK2P07205 417 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 XRCC5P13010 732 aaKnown RBP14.33□□□□□ -0.12
PTPRF-213ENST00000481019 NT5C2P49902 561 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 TRDNQ13061 729 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 CCDC178Q5BJE1 867 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 IFIT1BQ5T764 474 aaKnown RBP14.33□□□□□ -0.12
PTPRF-213ENST00000481019 RALYLQ86SE5 291 aaKnown RBP14.33□□□□□ -0.12
PTPRF-213ENST00000481019 NBPF11Q86T75 865 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 STAG2Q8N3U4 1231 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 APBA2Q99767 749 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 RANBP17Q9H2T7 1088 aaKnown RBP14.33□□□□□ -0.12
PTPRF-213ENST00000481019 MROH8Q9H579 483 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 LY9Q9HBG7 655 aa14.33□□□□□ -0.12
PTPRF-213ENST00000481019 HOXC6P09630 235 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 MUM1L1Q5H9M0 696 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 TMEM67Q5HYA8 995 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 KCNB2Q92953 911 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 SHISA4Q96DD7 197 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 TCEANC2Q96MN5 208 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 MMP19Q99542 508 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 HOMER2Q9NSB8 354 aa14.32□□□□□ -0.12
PTPRF-213ENST00000481019 SH2B2O14492 632 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-213ENST00000481019 STRNO43815 780 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms