RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 XRCC5P13010 732 aaKnown RBP22.28■■□□□ 1.16
PTCD3-210ENST00000473829 CCL5P13501 91 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 STAT3P40763 770 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 RGS2P41220 211 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 CCDC96Q2M329 555 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 IQCA1Q86XH1 822 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 ENAHQ8N8S7 591 aaPredicted RBP22.28■■□□□ 1.16
PTCD3-210ENST00000473829 DCAF4Q8WV16 495 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 ZSCAN10Q96SZ4 725 aaPredicted RBP22.28■■□□□ 1.16
PTCD3-210ENST00000473829 UNC93B1Q9H1C4 597 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 SLC38A10Q9HBR0 1119 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 IVNS1ABPQ9Y6Y0 642 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 TNKSO95271 1327 aa22.28■■□□□ 1.16
PTCD3-210ENST00000473829 E7EWF7 191 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 HMGCRP04035 888 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 PDHBP11177 359 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 EN2P19622 333 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-210ENST00000473829 UBXN2AP68543 259 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 TTBK2Q6IQ55 1244 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 KIAA1211Q6ZU35 1233 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 DGKHQ86XP1 1220 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 NPLOC4Q8TAT6 608 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 TMEM106CQ9BVX2 250 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 MROH8Q9H579 483 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 RAVER2Q9HCJ3 691 aaKnown RBP22.27■■□□□ 1.16
PTCD3-210ENST00000473829 ANO2Q9NQ90 1003 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 RIPK3Q9Y572 518 aa22.27■■□□□ 1.16
PTCD3-210ENST00000473829 FRMPD2Q68DX3 1309 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-210ENST00000473829 TNRC18O15417 2968 aaPredicted RBP22.26■■□□□ 1.15
PTCD3-210ENST00000473829 PLA2G6O60733 806 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 SLC25A27O95847 323 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 ADORA2AP29274 412 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 IKQ13123 557 aaPredicted RBP22.26■■□□□ 1.15
PTCD3-210ENST00000473829 SNRNP48Q6IEG0 339 aaKnown RBP22.26■■□□□ 1.15
PTCD3-210ENST00000473829 FAM160B2Q86V87 743 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 CPXCR1Q8N123 301 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 ANKS1AQ92625 1134 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 TEX13BQ9BXU2 312 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 FLRT1Q9NZU1 646 aa22.26■■□□□ 1.15
PTCD3-210ENST00000473829 ATP2A1O14983 1001 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 ZBED4O75132 1171 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 HOXC6P09630 235 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 SNHG28P0DPA3 235 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 SNAP25P60880 206 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 CHURC1Q8WUH1 139 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 RNF208Q9H0X6 261 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 PRR12Q9ULL5 1215 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 PLXNA1Q9UIW2 1896 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 ZNF536O15090 1300 aa22.25■■□□□ 1.15
PTCD3-210ENST00000473829 STRNO43815 780 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 COBLO75128 1261 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 ZKSCAN1P17029 563 aaPredicted RBP22.24■■□□□ 1.15
PTCD3-210ENST00000473829 SLC16A2P36021 539 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 COL9A3Q14050 684 aaPredicted RBP22.24■■□□□ 1.15
PTCD3-210ENST00000473829 SEC23AQ15436 765 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 CCDC178Q5BJE1 867 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 PNMA1Q8ND90 353 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 SHISA4Q96DD7 197 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 UBAC1Q9BSL1 405 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 GPCPD1Q9NPB8 672 aa22.24■■□□□ 1.15
PTCD3-210ENST00000473829 SLC27A2O14975 620 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 SLC4A3P48751 1232 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 ZNF543Q08ER8 600 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 TRDNQ13061 729 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 NECTIN1Q15223 517 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 MAP3K21Q5TCX8 1036 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 BTNL9Q6UXG8 535 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 MB21D2Q8IYB1 491 aaPredicted RBP22.23■■□□□ 1.15
PTCD3-210ENST00000473829 ABRAQ8N0Z2 381 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 CTDP1Q9Y5B0 961 aaPredicted RBP22.23■■□□□ 1.15
PTCD3-210ENST00000473829 SMCHD1A6NHR9 2005 aa22.23■■□□□ 1.15
PTCD3-210ENST00000473829 IGHA2P01877 340 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 GOLGA8HP0CJ92 632 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 FCER1AP12319 257 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 TAL1P17542 331 aaPredicted RBP22.22■■□□□ 1.15
PTCD3-210ENST00000473829 COPB2P35606 906 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 OAZ1P54368 228 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 ANTXR2P58335 489 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 CREB3L3Q68CJ9 461 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 CASC1Q6TDU7 716 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 CHST3Q7LGC8 479 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 NCOA7Q8NI08 942 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 AGBL1Q96MI9 1066 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 MMP19Q99542 508 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 KAT14Q9H8E8 782 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 SENP2Q9HC62 589 aa22.22■■□□□ 1.15
PTCD3-210ENST00000473829 PAK6Q9NQU5 681 aaPredicted RBP22.22■■□□□ 1.15
PTCD3-210ENST00000473829 GJB1P08034 283 aa22.21■■□□□ 1.15
PTCD3-210ENST00000473829 FDX1P10109 184 aa22.21■■□□□ 1.15
PTCD3-210ENST00000473829 PRKAR2AP13861 404 aaKnown RBP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 MLLT1Q03111 559 aaPredicted RBP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 CACNB2Q08289 660 aaPredicted RBP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 SYDE2Q5VT97 1194 aa22.21■■□□□ 1.15
PTCD3-210ENST00000473829 CCDC174Q6PII3 467 aa22.21■■□□□ 1.15
PTCD3-210ENST00000473829 RALYLQ86SE5 291 aaKnown RBP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 DPP9Q86TI2 863 aa22.21■■□□□ 1.15
PTCD3-210ENST00000473829 TRMT44Q8IYL2 757 aaKnown RBP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.21■■□□□ 1.15
PTCD3-210ENST00000473829 PGK2P07205 417 aa22.2■■□□□ 1.14
PTCD3-210ENST00000473829 GJA8P48165 433 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms