RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 EEF2P13639 858 aaKnown RBP14.58□□□□□ -0.07
USP40-208ENST00000450966 MGARPQ8TDB4 240 aa14.58□□□□□ -0.07
USP40-208ENST00000450966 CNKSR1Q969H4 720 aa14.58□□□□□ -0.07
USP40-208ENST00000450966 A0A1B0GVL5 298 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 ARHGEF9O43307 516 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 SKOR1P84550 965 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 DPP8Q6V1X1 898 aaPredicted RBP14.58□□□□□ -0.08
USP40-208ENST00000450966 TRMT1LQ7Z2T5 733 aaKnown RBP14.58□□□□□ -0.08
USP40-208ENST00000450966 KIAA2013Q8IYS2 634 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 SLC4A4Q9Y6R1 1079 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 NDC80O14777 642 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 BLVRAP53004 296 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 CYLC2Q14093 348 aaPredicted RBP14.58□□□□□ -0.08
USP40-208ENST00000450966 PSMD6Q15008 389 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 INAQ16352 499 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 FAM83GA6ND36 823 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 SERPINB6P35237 376 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 ARHGAP22Q7Z5H3 698 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 LARGE2Q8N3Y3 721 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 NRBP1Q9UHY1 535 aa14.58□□□□□ -0.08
USP40-208ENST00000450966 CTIFO43310 598 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 TNFAIP1Q13829 316 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 ZCCHC11Q5TAX3 1644 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 KIF24Q5T7B8 1368 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 CTNND1O60716 968 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 ATICP31939 592 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 STAT6P42226 847 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 WDR75Q8IWA0 830 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 GLT8D2Q9H1C3 349 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 TMCC1O94876 653 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 EEF1DP29692 281 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 KLC1Q07866 573 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 B4GALNT2Q8NHY0 566 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 PRPF31Q8WWY3 499 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 LRRIQ3A6PVS8 624 aaPredicted RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 KLHL23Q8NBE8 558 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 PNMA2Q9UL42 364 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 PZPP20742 1482 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 SAMD9LQ8IVG5 1584 aa14.57□□□□□ -0.08
USP40-208ENST00000450966 RBM8AQ9Y5S9 174 aaKnown RBP14.57□□□□□ -0.08
USP40-208ENST00000450966 DKC1O60832 514 aaKnown RBP eCLIP14.56□□□□□ -0.08
USP40-208ENST00000450966 TADA3O75528 432 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 SCYL3Q8IZE3 742 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 H7C1D1 291 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 ECM2O94769 699 aaPredicted RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 UFL1O94874 794 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 GPR162Q16538 588 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 IFIT1BQ5T764 474 aaKnown RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 ALG1Q9BT22 464 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 SPZ1Q9BXG8 430 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 UBAP1Q9NZ09 502 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 ATP6V0A2Q9Y487 856 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 PAPOLAP51003 745 aaKnown RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 RPS6KA1Q15418 735 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 SYCE1Q8N0S2 351 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 TRIML2Q8N7C3 387 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 CARD10Q9BWT7 1032 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 ZCCHC17Q9NP64 241 aaKnown RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 CNGB3Q9NQW8 809 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 GAS8O95995 478 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 S100BP04271 92 aaPredicted RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 CCT6AP40227 531 aaKnown RBP14.56□□□□□ -0.08
USP40-208ENST00000450966 EMBQ6PCB8 327 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 ANKRD44Q8N8A2 993 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 CASP10Q92851 521 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 PARD3Q8TEW0 1356 aa14.56□□□□□ -0.08
USP40-208ENST00000450966 SYNRGQ9UMZ2 1314 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 ZBTB43O43298 467 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 MAGEA1P43355 309 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 OCA2Q04671 838 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 NUDCD3Q8IVD9 361 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 DHX58Q96C10 678 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 DYDC2Q96IM9 177 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 METTL22Q9BUU2 404 aaPredicted RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 ARHGEF10LQ9HCE6 1279 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 NFE2L3Q9Y4A8 694 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 IQCA1LA6NCM1 817 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 IL9RQ01113 521 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 SFSWAPQ12872 951 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 SNX1Q13596 522 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 ZNF483Q8TF39 744 aaPredicted RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 PARVBQ9HBI1 364 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 KRT15P19012 456 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 BASP1P80723 227 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 ATP6V0A1Q93050 837 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 NRBF2Q96F24 287 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 CCDC159P0C7I6 412 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 SLC9C1Q4G0N8 1177 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 MCMDC2Q4G0Z9 681 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 MYSM1Q5VVJ2 828 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 PLEKHM2Q8IWE5 1019 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 MRPL50Q8N5N7 158 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 TPCN1Q9ULQ1 816 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 SSX2IPQ9Y2D8 614 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 GJA3Q9Y6H8 435 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 CALML3P27482 149 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 LTKP29376 864 aa14.55□□□□□ -0.08
USP40-208ENST00000450966 HIBADHP31937 336 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 LONP1P36776 959 aaKnown RBP14.55□□□□□ -0.08
USP40-208ENST00000450966 ADKP55263 362 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms