RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TLR2O60603 784 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 COG2Q14746 738 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 SEC23AQ15436 765 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 GPATCH4Q5T3I0 446 aaKnown RBP11.82□□□□□ -0.52
VPS53-202ENST00000389040 FAM43AQ8N2R8 423 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 LRRC2Q9BYS8 371 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 PRC1O43663 620 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 NMT2O60551 498 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 GADD45BO75293 160 aaPredicted RBP11.82□□□□□ -0.52
VPS53-202ENST00000389040 SNHG28P0DPA3 235 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 RCAN1P53805 252 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 IRX3P78415 501 aaPredicted RBP11.82□□□□□ -0.52
VPS53-202ENST00000389040 WTAPQ15007 396 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 TMEM67Q5HYA8 995 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 SLFN13Q68D06 897 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 CYB5R4Q7L1T6 521 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 SGMS1Q86VZ5 419 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 MB21D1Q8N884 522 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 CHURC1Q8WUH1 139 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 SYAP1Q96A49 352 aaPredicted RBP11.82□□□□□ -0.52
VPS53-202ENST00000389040 AGXT2Q9BYV1 514 aa11.82□□□□□ -0.52
VPS53-202ENST00000389040 TCHHQ07283 1943 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 GREB1LQ9C091 1923 aaPredicted RBP11.81□□□□□ -0.52
VPS53-202ENST00000389040 PFKFB2O60825 505 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 NDUFB10O96000 172 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 CALM1P0DP23 149 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 CALM2P0DP24 149 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 CALM3P0DP25 149 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 BMP3P12645 472 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 SLC1A4P43007 532 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 PPP2R5BQ15173 497 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 TAF1CQ15572 869 aaPredicted RBP11.81□□□□□ -0.52
VPS53-202ENST00000389040 CSPP1Q1MSJ5 1256 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 FAM160B2Q86V87 743 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 PRPF38AQ8NAV1 312 aaKnown RBP11.81□□□□□ -0.52
VPS53-202ENST00000389040 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 ASCC2Q9H1I8 757 aaPredicted RBP11.81□□□□□ -0.52
VPS53-202ENST00000389040 RPAP3Q9H6T3 665 aaPredicted RBP11.81□□□□□ -0.52
VPS53-202ENST00000389040 FEM1BQ9UK73 627 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 PNMA2Q9UL42 364 aa11.81□□□□□ -0.52
VPS53-202ENST00000389040 FIBPO43427 364 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 ANTXR2P58335 489 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 SCRN1Q12765 414 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 TREML2Q5T2D2 321 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 CATIPQ7Z7H3 387 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 CLEC10AQ8IUN9 316 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 SMCR8Q8TEV9 937 aaPredicted RBP11.8□□□□□ -0.52
VPS53-202ENST00000389040 LLPHQ9BRT6 129 aaKnown RBP11.8□□□□□ -0.52
VPS53-202ENST00000389040 SYCE3A1L190 88 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 JAK2O60674 1132 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 TRPA1O75762 1119 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 NASPP49321 788 aaPredicted RBP11.8□□□□□ -0.52
VPS53-202ENST00000389040 UBE2HP62256 183 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 DNM1Q05193 864 aaKnown RBP11.8□□□□□ -0.52
VPS53-202ENST00000389040 APOBRQ0VD83 1088 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 ARHGEF6Q15052 776 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 ZYXQ15942 572 aaKnown RBP11.8□□□□□ -0.52
VPS53-202ENST00000389040 ASPRV1Q53RT3 343 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 SYNE3Q6ZMZ3 975 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 ZKSCAN3Q9BRR0 538 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 ADAMTS5Q9UNA0 930 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 RABGAP1Q9Y3P9 1069 aa11.8□□□□□ -0.52
VPS53-202ENST00000389040 CCDC69A6NI79 296 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 SH2B2O14492 632 aaPredicted RBP11.79□□□□□ -0.52
VPS53-202ENST00000389040 DDAH1O94760 285 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 PDHBP11177 359 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 SMARCA1P28370 1054 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 KIF5BP33176 963 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 CTCFP49711 727 aaPredicted RBP11.79□□□□□ -0.52
VPS53-202ENST00000389040 STAT2P52630 851 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 HERVK_113P62684 666 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 CRHR2Q13324 411 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 LRSAM1Q6UWE0 723 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 C17orf99Q6UX52 265 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 BTNL9Q6UXG8 535 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 SPICE1Q8N0Z3 855 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 LRRC47Q8N1G4 583 aaKnown RBP11.79□□□□□ -0.52
VPS53-202ENST00000389040 TANGO6Q9C0B7 1094 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 LY9Q9HBG7 655 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 PHIPQ8WWQ0 1821 aa11.79□□□□□ -0.52
VPS53-202ENST00000389040 DSG3P32926 999 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 GNAQP50148 359 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 EVCP57679 992 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 ZNF543Q08ER8 600 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 FAM110CQ1W6H9 321 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 SMARCC2Q8TAQ2 1214 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 NKX2-3Q8TAU0 364 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 LZTS2Q9BRK4 669 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 PPP1R9AQ9ULJ8 1098 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 SLC12A7Q9Y666 1083 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 ATAD5Q96QE3 1844 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 ADGRA2Q96PE1 1338 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 FLOT1O75955 427 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 GNRH1P01148 92 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 COPB2P35606 906 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 OAZ1P54368 228 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 KRT85P78386 507 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 TROAPQ12815 778 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 KIAA1755Q5JYT7 1200 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 FAM83BQ5T0W9 1011 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms