RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 TMEM67Q5HYA8 995 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 RIC8AQ9NPQ8 531 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 DKK3Q9UBP4 350 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 RAD54L2Q9Y4B4 1467 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 KRIT1O00522 736 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 CDC25BP30305 580 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 MFSD6Q6ZSS7 791 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 ZGRF1Q86YA3 2104 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 OSBPL9Q96SU4 736 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 TMEM60Q9H2L4 133 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 SAMM50Q9Y512 469 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 PRRC2BQ5JSZ5 2229 aaKnown RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 HMGB2P26583 209 aaKnown RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 STAT2P52630 851 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 PDE4BQ07343 736 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 PPP6R3Q5H9R7 873 aaPredicted RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 DACH2Q96NX9 599 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 LRRC37BQ96QE4 947 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 PLEKHA4Q9H4M7 779 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 STX18Q9P2W9 335 aaKnown RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 STX10O60499 249 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 PPP2R1AP30153 589 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 RAPGEF1Q13905 1077 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 SLFNL1Q499Z3 407 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 ETAA1Q9NY74 926 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 ZNF839A8K0R7 811 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 ZNF189O75820 626 aaPredicted RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 EIF3BP55884 814 aaKnown RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 ART3Q13508 389 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 DONSONQ9NYP3 566 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 AFG3L2Q9Y4W6 797 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 USP16Q9Y5T5 823 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 FMNL1O95466 1100 aaPredicted RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 SLFN14P0C7P3 912 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 CALML3P27482 149 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 GRIN1Q05586 938 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 CUL1Q13616 776 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 TMC5Q6UXY8 1006 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 FBXO18Q8NFZ0 1043 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 BRD8Q9H0E9 1235 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 ENO4A6NNW6 628 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 MSH2P43246 934 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 NCOA7Q8NI08 942 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 GSDMAQ96QA5 445 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 KLHL31Q9H511 634 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 RTL9Q8NET4 1388 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 GOLGA8IPA6NC78 632 aa6.73□□□□□ -1.33
VCAN-203ENST00000343200 IDH1O75874 414 aaKnown RBP6.73□□□□□ -1.33
VCAN-203ENST00000343200 PI4KAP42356 2102 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 DNAJC6O75061 913 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 APOBRQ0VD83 1088 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MYO1EQ12965 1108 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 PPP2R5DQ14738 602 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 KCTD16Q68DU8 428 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 LUZP2Q86TE4 346 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 IQUBQ8NA54 791 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 CNNM2Q9H8M5 875 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 IFT122Q9HBG6 1241 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 TRPC5Q9UL62 973 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 TRIM33Q9UPN9 1127 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 LZTS1Q9Y250 596 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 CADPSQ9ULU8 1353 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 IFIT3O14879 490 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 PNMA6AP0CW24 399 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 NPR1P16066 1061 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 EXOSC9Q06265 439 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 ATG16L1Q676U5 607 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 CCDC103Q8IW40 242 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 LRRC8AQ8IWT6 810 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 RSAD2Q8WXG1 361 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MAML1Q92585 1016 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 SYBUQ9NX95 663 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 WDR47O94967 919 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MARCKSP29966 332 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 ELF1P32519 619 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MTHFSP49914 203 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MRPS35P82673 323 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 MAP3K12Q12852 859 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 BIRC3Q13489 604 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 AHI1Q8N157 1196 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 OR9Q1Q8NGQ5 310 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 OMA1Q96E52 524 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 TRAF3IP3Q9Y228 551 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 C19orf60Q96EN9 201 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MPP6Q9NZW5 540 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 TRIM16LQ309B1 348 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 DCAF17Q5H9S7 520 aaPredicted RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 ANO5Q75V66 913 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 KRT73Q86Y46 540 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 TMTC2Q8N394 836 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 ANKRD42Q8N9B4 389 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 MRRFQ96E11 262 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 FAM129AQ9BZQ8 928 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 FHOD3Q2V2M9 1422 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 GYG2O15488 501 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 BCRP11274 1271 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 RNASE9P60153 205 aaKnown RBP6.72□□□□□ -1.33
VCAN-203ENST00000343200 ASPHQ12797 758 aa6.72□□□□□ -1.33
VCAN-203ENST00000343200 ASIC2Q16515 512 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms