RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 POU4F1Q01851 419 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 SSRP1Q08945 709 aaKnown RBP5.04□□□□□ -1.6
HMGB1-201ENST00000326004 AOC3Q16853 763 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 LONRF2Q1L5Z9 754 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 CWF19L1Q69YN2 538 aaKnown RBP5.04□□□□□ -1.6
HMGB1-201ENST00000326004 VSIG10LQ86VR7 867 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 LRRN4CLQ8ND94 238 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 ADCY4Q8NFM4 1077 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 BRF1Q92994 677 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 UBE2FQ969M7 185 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 PPP1R14AQ96A00 147 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 TCTN2Q96GX1 697 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 DNAJC7Q99615 494 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 NOL6Q9H6R4 1146 aaKnown RBP5.04□□□□□ -1.6
HMGB1-201ENST00000326004 DUSP13Q9UII6 198 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 AKT3Q9Y243 479 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 EMC9Q9Y3B6 208 aa5.04□□□□□ -1.6
HMGB1-201ENST00000326004 KIAA1324LA8MWY0 1029 aaPredicted RBP5.03□□□□□ -1.6
HMGB1-201ENST00000326004 SPINK2P20155 84 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 BMP8BP34820 402 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 PCBP3P57721 371 aaKnown RBP5.03□□□□□ -1.6
HMGB1-201ENST00000326004 ZC3H12BQ5HYM0 836 aaKnown RBP5.03□□□□□ -1.6
HMGB1-201ENST00000326004 SPATC1Q76KD6 591 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 ZNF227Q86WZ6 799 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 DTX1Q86Y01 620 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 TRIM59Q8IWR1 403 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 JMYQ8N9B5 988 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 LINC00116Q8NCU8 138 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 MRGPRX3Q96LB0 322 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 SPATA9Q9BWV2 254 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 SLC5A6Q9Y289 635 aa5.03□□□□□ -1.6
HMGB1-201ENST00000326004 TMA7Q9Y2S6 64 aaKnown RBP5.03□□□□□ -1.6
HMGB1-201ENST00000326004 KDM2BQ8NHM5 1336 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 A0A1W2PQU0 124 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 H0Y8X5 98 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 RBAK-RBAKDNI3L0D1 243 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 MEIS1O00470 390 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 ITGAVP06756 1048 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 LTKP29376 864 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 CTSKP43235 329 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 NOP2P46087 812 aaKnown RBP5.02□□□□□ -1.61
HMGB1-201ENST00000326004 AMPD2Q01433 879 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 HSP90AA2PQ14568 343 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-201ENST00000326004 PPP2R5DQ14738 602 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 RNF111Q6ZNA4 994 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 USHBP1Q8N6Y0 703 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 THAP3Q8WTV1 239 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-201ENST00000326004 BCL7CQ8WUZ0 217 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-201ENST00000326004 ZDHHC15Q96MV8 337 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 CWC22Q9HCG8 908 aaKnown RBP5.02□□□□□ -1.61
HMGB1-201ENST00000326004 ATP13A1Q9HD20 1204 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 LMCD1Q9NZU5 365 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 PFDN2Q9UHV9 154 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 MINPP1Q9UNW1 487 aa5.02□□□□□ -1.61
HMGB1-201ENST00000326004 TRAV20A0A0B4J274 112 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 SSU72P8A0A1W2PR75 194 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 TLDC2A0PJX2 215 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 DIAPH1O60610 1272 aaKnown RBP5.01□□□□□ -1.61
HMGB1-201ENST00000326004 ZNF205O95201 554 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 KCNH1O95259 989 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 ESR1P03372 595 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 SSTR4P31391 388 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 PPP2R2AP63151 447 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 IKZF1Q13422 519 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 C2orf27AQ580R0 203 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 ANGEL2Q5VTE6 544 aaKnown RBP5.01□□□□□ -1.61
HMGB1-201ENST00000326004 GIMAP6Q6P9H5 292 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 CRTC3Q6UUV7 619 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 CREG2Q8IUH2 290 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 LILRB2Q8N423 598 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 CCDC140Q96MF4 163 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 AARSD1Q9BTE6 412 aaKnown RBP5.01□□□□□ -1.61
HMGB1-201ENST00000326004 CCDC39Q9UFE4 941 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 TCFL5Q9UL49 500 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 ANGEL1Q9UNK9 670 aaKnown RBP5.01□□□□□ -1.61
HMGB1-201ENST00000326004 TBX22Q9Y458 520 aa5.01□□□□□ -1.61
HMGB1-201ENST00000326004 WASH4PA8MWX3 477 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 ADCY3O60266 1144 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 MED26O95402 600 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 CAPNS1P04632 268 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 SYPP08247 313 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 VAV1P15498 845 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 HOXC12P31275 282 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 EGR3Q06889 387 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 BNIP3Q12983 259 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 GTF2IRD2BQ6EKJ0 949 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 GTF2IRD2Q86UP8 949 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 ZBTB38Q8NAP3 1195 aaPredicted RBP5□□□□□ -1.61
HMGB1-201ENST00000326004 ZSWIM2Q8NEG5 633 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 SYTL4Q96C24 671 aaPredicted RBP5□□□□□ -1.61
HMGB1-201ENST00000326004 SLC26A8Q96RN1 970 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 FOXP3Q9BZS1 431 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 NKX2-4Q9H2Z4 354 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 CYP26B1Q9NR63 512 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 PCDHA11Q9Y5I1 949 aa5□□□□□ -1.61
HMGB1-201ENST00000326004 CCDC163A0A0D9SF12 145 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 AURKAO14965 403 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 VAMP4O75379 141 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 CPP00450 1065 aa4.99□□□□□ -1.61
HMGB1-201ENST00000326004 CD3EP07766 207 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms