RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SMCHD1A6NHR9 2005 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 FCER1AP12319 257 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 SMAD3P84022 425 aaKnown RBP9.45□□□□□ -0.9
CLK1-215ENST00000621181 SH3RF1Q7Z6J0 888 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 ERC1Q8IUD2 1116 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 SDR42E1Q8WUS8 393 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 MAML3Q96JK9 1138 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 SH2D4AQ9H788 454 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 EXOC6BQ9Y2D4 811 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 TRIM43BA6NCK2 446 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 RARBP10826 455 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 FOSL2P15408 326 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 PDE6AP16499 860 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 ICA1Q05084 483 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 C1orf53Q5VUE5 145 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 SLC44A5Q8NCS7 719 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 MYLIPQ8WY64 445 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 TRIM43Q96BQ3 446 aaPredicted RBP9.45□□□□□ -0.9
CLK1-215ENST00000621181 ATG4CQ96DT6 458 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 RNPC3Q96LT9 517 aaKnown RBP9.45□□□□□ -0.9
CLK1-215ENST00000621181 DCP1AQ9NPI6 582 aaPredicted RBP9.45□□□□□ -0.9
CLK1-215ENST00000621181 XPNPEP3Q9NQH7 507 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 SWAP70Q9UH65 585 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 TACC3Q9Y6A5 838 aa9.45□□□□□ -0.9
CLK1-215ENST00000621181 TTC28Q96AY4 2481 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 A0A0G2JMZ2 1700 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 ZNF532Q9HCE3 1301 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 CLTBP09497 229 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 RAG1P15918 1043 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 TLE2Q04725 743 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 KIAA1755Q5JYT7 1200 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 RNF180Q86T96 592 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 CLEC10AQ8IUN9 316 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 DNAJC2Q99543 621 aaKnown RBP9.44□□□□□ -0.9
CLK1-215ENST00000621181 BCL11AQ9H165 835 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 TTYH1Q9H313 450 aaPredicted RBP9.44□□□□□ -0.9
CLK1-215ENST00000621181 IL1RAPL2Q9NP60 686 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 SPTBN5Q9NRC6 3674 aaKnown RBP9.44□□□□□ -0.9
CLK1-215ENST00000621181 MYH8P13535 1937 aa9.44□□□□□ -0.9
CLK1-215ENST00000621181 GOLIM4O00461 696 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 WDR46O15213 610 aaKnown RBP9.43□□□□□ -0.9
CLK1-215ENST00000621181 RAD21O60216 631 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 PQBP1O60828 265 aaKnown RBP9.43□□□□□ -0.9
CLK1-215ENST00000621181 SLC25A27O95847 323 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 PGK1P00558 417 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 CYP2D6P10635 497 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 KCTD2Q14681 263 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 HSP90AB4PQ58FF6 505 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 CEP85Q6P2H3 762 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 DYNLL2Q96FJ2 89 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 MMP19Q99542 508 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 VCPKMTQ9H867 229 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 TMX2Q9Y320 296 aa9.43□□□□□ -0.9
CLK1-215ENST00000621181 ZNFX1Q9P2E3 1918 aaKnown RBP9.43□□□□□ -0.9
CLK1-215ENST00000621181 PGK2P07205 417 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 RLBP1P12271 317 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 AKR1B1P15121 316 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 ITGB8P26012 769 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 TMEM132BQ14DG7 1078 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 AMOTL1Q8IY63 956 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 CLASRPQ8N2M8 674 aaKnown RBP9.42□□□□□ -0.9
CLK1-215ENST00000621181 LCORLQ8N3X6 602 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 NRBP1Q9UHY1 535 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 PHF24Q9UPV7 400 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 CNPY2Q9Y2B0 182 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 MYO9BQ13459 2157 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 TMEM265A0A087WTH1 108 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 A0A1W2PQ45 241 aaPredicted RBP9.42□□□□□ -0.9
CLK1-215ENST00000621181 A0A1W2PQY0 241 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 APBB1O00213 710 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 IFIT2P09913 472 aaKnown RBP9.42□□□□□ -0.9
CLK1-215ENST00000621181 AKR1A1P14550 325 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 FPGSQ05932 587 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 RHPN1Q8TCX5 695 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 SYMPKQ92797 1274 aaKnown RBP9.42□□□□□ -0.9
CLK1-215ENST00000621181 DDRGK1Q96HY6 314 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 CCDC17Q96LX7 622 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 TINF2Q9BSI4 451 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 ARMT1Q9H993 441 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 TMEM39AQ9NV64 488 aa9.42□□□□□ -0.9
CLK1-215ENST00000621181 COL11A1P12107 1806 aaPredicted RBP9.42□□□□□ -0.9
CLK1-215ENST00000621181 BAZ2AQ9UIF9 1905 aaKnown RBP9.41□□□□□ -0.9
CLK1-215ENST00000621181 TCRBV5S4A2TA0A5A2 114 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 DCDC2CA8MYV0 355 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 DNAJB2P25686 324 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 STAT3P40763 770 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 RIOX2Q8IUF8 465 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 SIAH1Q8IUQ4 282 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 NUP133Q8WUM0 1156 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 LENG1Q96BZ8 264 aaPredicted RBP9.41□□□□□ -0.9
CLK1-215ENST00000621181 KANSL2Q9H9L4 492 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 GOPCQ9HD26 462 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 ATP8A2Q9NTI2 1148 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 FBXO28Q9NVF7 368 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 DIS3Q9Y2L1 958 aaKnown RBP9.41□□□□□ -0.9
CLK1-215ENST00000621181 PARP14Q460N5 1801 aa9.41□□□□□ -0.9
CLK1-215ENST00000621181 VWA5AO00534 786 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 KIAA0355O15063 1070 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 PRKAB2O43741 272 aa9.4□□□□□ -0.9
CLK1-215ENST00000621181 MBD4O95243 580 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms