RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 FBXO28Q9NVF7 368 aa17.61■□□□□ 0.41
TRIM28-207ENST00000597136 HMGB1P09429 215 aaKnown RBP17.6■□□□□ 0.41
TRIM28-207ENST00000597136 CPA1P15085 419 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 HERVK_113P62684 666 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 SLFN13Q68D06 897 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 SAMD1Q6SPF0 538 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-207ENST00000597136 SMCR8Q8TEV9 937 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-207ENST00000597136 LPAR1Q92633 364 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 TTC14Q96N46 770 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 TANGO6Q9C0B7 1094 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 SENP2Q9HC62 589 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 TXNRD2Q9NNW7 524 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 PNMA3Q9UL41 463 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 RBM19Q9Y4C8 960 aaKnown RBP17.6■□□□□ 0.41
TRIM28-207ENST00000597136 CYP46A1Q9Y6A2 500 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 TNKSO95271 1327 aa17.6■□□□□ 0.41
TRIM28-207ENST00000597136 WDR46O15213 610 aaKnown RBP17.59■□□□□ 0.41
TRIM28-207ENST00000597136 BCRP11274 1271 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 TOP1P11387 765 aaKnown RBP17.59■□□□□ 0.41
TRIM28-207ENST00000597136 SEC23AQ15436 765 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 BLOC1S2Q6QNY1 142 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 RUFY3Q7L099 469 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 RALYLQ86SE5 291 aaKnown RBP17.59■□□□□ 0.41
TRIM28-207ENST00000597136 IQCA1Q86XH1 822 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 ANKRD13CQ8N6S4 541 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 GMCL1P1Q8NEA9 526 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 GPHNQ9NQX3 736 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-207ENST00000597136 RBPJLQ9UBG7 517 aa17.59■□□□□ 0.41
TRIM28-207ENST00000597136 FKTNO75072 461 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 RPS6KB1P23443 525 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 CTGFP29279 349 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 NEK4P51957 841 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 SP3Q02447 781 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 COG2Q14746 738 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 Q3C1V9 767 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 NOM1Q5C9Z4 860 aaKnown RBP17.58■□□□□ 0.41
TRIM28-207ENST00000597136 DGKHQ86XP1 1220 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 ANKS1AQ92625 1134 aa17.58■□□□□ 0.41
TRIM28-207ENST00000597136 SPDYE16A6NNV3 312 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-207ENST00000597136 EXOSC10Q01780 885 aaKnown RBP17.57■□□□□ 0.4
TRIM28-207ENST00000597136 DHX32Q7L7V1 743 aaKnown RBP17.57■□□□□ 0.4
TRIM28-207ENST00000597136 CD99L2Q8TCZ2 262 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 IGDCC4Q8TDY8 1250 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 ARHGAP39Q9C0H5 1083 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 IFIT3O14879 490 aaKnown RBP17.57■□□□□ 0.4
TRIM28-207ENST00000597136 FLOT1O75955 427 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 DSG3P32926 999 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 MCM5P33992 734 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 PPP4R3BQ5MIZ7 849 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 KCTD1Q719H9 257 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 TCEANC2Q96MN5 208 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 UBAC1Q9BSL1 405 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 LRRC2Q9BYS8 371 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 PRDM10Q9NQV6 1147 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 SYNPO2Q9UMS6 1093 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 PLXNA1Q9UIW2 1896 aa17.57■□□□□ 0.4
TRIM28-207ENST00000597136 HTTP42858 3142 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 PRC1O43663 620 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 CNMDO75829 334 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 BMP3P12645 472 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 NT5C2P49902 561 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 TTBK2Q6IQ55 1244 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 IL27Q8NEV9 243 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 ATG4CQ96DT6 458 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 GMCL1Q96IK5 515 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 PAGR1Q9BTK6 254 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 HOXC10Q9NYD6 342 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 BTBD7Q9P203 1132 aa17.56■□□□□ 0.4
TRIM28-207ENST00000597136 SLC1A4P43007 532 aa17.55■□□□□ 0.4
TRIM28-207ENST00000597136 GCLCP48506 637 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-207ENST00000597136 CCDC178Q5BJE1 867 aa17.55■□□□□ 0.4
TRIM28-207ENST00000597136 COL13A1Q5TAT6 717 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-207ENST00000597136 PNMA1Q8ND90 353 aa17.55■□□□□ 0.4
TRIM28-207ENST00000597136 PDRG1Q9NUG6 133 aa17.55■□□□□ 0.4
TRIM28-207ENST00000597136 WDR19Q8NEZ3 1342 aa17.55■□□□□ 0.4
TRIM28-207ENST00000597136 FRMPD2Q68DX3 1309 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-207ENST00000597136 TMEM232C9JQI7 657 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 PDHBP11177 359 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 LACTBP83111 547 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-207ENST00000597136 IFIT1BQ5T764 474 aaKnown RBP17.54■□□□□ 0.4
TRIM28-207ENST00000597136 ALDH8A1Q9H2A2 487 aaPredicted RBP17.54■□□□□ 0.4
TRIM28-207ENST00000597136 KAT14Q9H8E8 782 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 MORF4L1Q9UBU8 362 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 ISY1Q9ULR0 285 aaKnown RBP17.54■□□□□ 0.4
TRIM28-207ENST00000597136 ADAMTS5Q9UNA0 930 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 MCM3APO60318 1980 aa17.54■□□□□ 0.4
TRIM28-207ENST00000597136 ST18O60284 1047 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 WTAPQ15007 396 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 TMEM67Q5HYA8 995 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 LBX2Q6XYB7 198 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 GPCPD1Q9NPB8 672 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 PPP1R9AQ9ULJ8 1098 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 GOLGA8HP0CJ92 632 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 SLC16A2P36021 539 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 ERVK-9P63128 1117 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 ERVK-24P63145 666 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 FAM110CQ1W6H9 321 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 CCDC96Q2M329 555 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 FBXL16Q8N461 479 aa17.53■□□□□ 0.4
TRIM28-207ENST00000597136 KIFC2Q96AC6 838 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms