RNA–Protein interactions for RNA: ENST00000576932.5

TOM1L1-223, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 1 (best)

Gene TOM1L1, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-223	ENST00000576932	EDC3	Q96F86	508 aa	Known RBP	11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PORCN	Q9H237	461 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CEP126	Q9P2H0	1117 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RLF	Q13129	1914 aa		11.44	□□□□□ -0.58
TOM1L1-223	ENST00000576932	FAM196B	A6NMK8	535 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PHKA1	P46020	1223 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CCNA1	P78396	465 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SLC39A5	Q6ZMH5	540 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ARRDC4	Q8NCT1	418 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PRM3	Q9NNZ6	103 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RABGAP1	Q9Y3P9	1069 aa		11.43	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SLC15A5	A6NIM6	579 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	USP17L10	C9JJH3	530 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	LILRB3	O75022	631 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RASGRF1	Q13972	1273 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RRP1B	Q14684	758 aa	Known RBP	11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PUS10	Q3MIT2	529 aa	Known RBP	11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CCDC102B	Q68D86	513 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	BAD	Q92934	168 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	USP44	Q9H0E7	712 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	DHX36	Q9H2U1	1008 aa	Known RBP	11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PDLIM7	Q9NR12	457 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PI4KB	Q9UBF8	816 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ABCF2	Q9UG63	623 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ATP11B	Q9Y2G3	1177 aa		11.42	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PTPRC	P08575	1304 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	IGHA2	P01877	340 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	LDHC	P07864	332 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	GSTO1	P78417	241 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	MECOM	Q03112	1051 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RETREG3	Q86VR2	466 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	METTL16	Q86W50	562 aa	Known RBP	11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	USP38	Q8NB14	1042 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	BANK1	Q8NDB2	785 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	IL21	Q9HBE4	155 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CWC22	Q9HCG8	908 aa	Known RBP	11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	FLRT1	Q9NZU1	646 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SLC27A5	Q9Y2P5	690 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	BDP1	A6H8Y1	2624 aa		11.41	□□□□□ -0.58
TOM1L1-223	ENST00000576932	KBTBD13	C9JR72	458 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PEX10	O60683	326 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	CYBA	P13498	195 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	IL15	P40933	162 aa	Predicted RBP	11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	ATP2B2	Q01814	1243 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	GRB14	Q14449	540 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	GRIN2C	Q14957	1233 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	AKNAD1	Q5T1N1	836 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	LBX2	Q6XYB7	198 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SCUBE3	Q8IX30	993 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	C12orf42	Q96LP6	360 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	RNPC3	Q96LT9	517 aa	Known RBP	11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PAGR1	Q9BTK6	254 aa		11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.4	□□□□□ -0.58
TOM1L1-223	ENST00000576932	SYNGAP1	Q96PV0	1343 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	TRIM43B	A6NCK2	446 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	CNGA1	P29973	690 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	RFC5	P40937	340 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	MAP3K12	Q12852	859 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	TRIM60	Q495X7	471 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	OLFML2B	Q68BL8	750 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	BLOC1S3	Q6QNY0	202 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L2	Q6R6M4	530 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	ZNF384	Q8TF68	577 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	TRIM43	Q96BQ3	446 aa	Predicted RBP	11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	ASB2	Q96Q27	587 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	THEG	Q9P2T0	379 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	RAPGEFL1	Q9UHV5	662 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	PCDHB15	Q9Y5E8	787 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	TACC3	Q9Y6A5	838 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	IVNS1ABP	Q9Y6Y0	642 aa		11.39	□□□□□ -0.59
TOM1L1-223	ENST00000576932	ZNF236	Q9UL36	1845 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L15	C9J2P7	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L13	C9JLJ4	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L11	C9JVI0	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L18	D6R9N7	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L22	D6RA61	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L17	D6RBQ6	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L19	D6RCP7	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L20	D6RJB6	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	CNMD	O75829	334 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	CYP2C19	P33261	490 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	COPS2	P61201	443 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	GUCA2A	Q02747	115 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USP17L24	Q0WX57	530 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	MVP	Q14764	893 aa	Known RBP	11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	GJC2	Q5T442	439 aa	Predicted RBP	11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	TRPV1	Q8NER1	839 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	NSUN4	Q96CB9	384 aa	Known RBP	11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	USB1	Q9BQ65	265 aa	Known RBP	11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	C1QTNF1	Q9BXJ1	281 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	ZNF576	Q9H609	170 aa		11.38	□□□□□ -0.59
TOM1L1-223	ENST00000576932	SIPA1L1	O43166	1804 aa		11.37	□□□□□ -0.59
TOM1L1-223	ENST00000576932	KIAA0355	O15063	1070 aa		11.37	□□□□□ -0.59
TOM1L1-223	ENST00000576932	SEPT4	O43236	478 aa		11.37	□□□□□ -0.59
TOM1L1-223	ENST00000576932	ADORA1	P30542	326 aa		11.37	□□□□□ -0.59
TOM1L1-223	ENST00000576932	MRPS5	P82675	430 aa	Known RBP	11.37	□□□□□ -0.59
TOM1L1-223	ENST00000576932	SH3RF1	Q7Z6J0	888 aa		11.37	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms