RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 OSBPP22059 807 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 RPS6KB1P23443 525 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 DCAF4Q8WV16 495 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 LRRC2Q9BYS8 371 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 ZFYVE28Q9HCC9 887 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 ZSWIM6Q9HCJ5 1215 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 HSPA1AP0DMV8 641 aaKnown RBP25.41■■□□□ 1.66
SNX1-206ENST00000559389 HSPA1BP0DMV9 641 aaKnown RBP25.41■■□□□ 1.66
SNX1-206ENST00000559389 SNHG28P0DPA3 235 aa25.41■■□□□ 1.66
SNX1-206ENST00000559389 LIFRP42702 1097 aa25.41■■□□□ 1.66
SNX1-206ENST00000559389 SLC1A4P43007 532 aa25.41■■□□□ 1.66
SNX1-206ENST00000559389 UPF2Q9HAU5 1272 aaKnown RBP25.41■■□□□ 1.66
SNX1-206ENST00000559389 BMP3P12645 472 aa25.4■■□□□ 1.66
SNX1-206ENST00000559389 RBM25P49756 843 aaKnown RBP25.4■■□□□ 1.66
SNX1-206ENST00000559389 C22orf23Q9BZE7 217 aa25.4■■□□□ 1.66
SNX1-206ENST00000559389 MTMR7Q9Y216 660 aa25.4■■□□□ 1.66
SNX1-206ENST00000559389 MYPNQ86TC9 1320 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 TLR2O60603 784 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 TBC1D8O95759 1140 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 CCDC96Q2M329 555 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 RUFY3Q7L099 469 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 SMCR8Q8TEV9 937 aaPredicted RBP25.39■■□□□ 1.66
SNX1-206ENST00000559389 UPF3BQ9BZI7 483 aaKnown RBP25.39■■□□□ 1.66
SNX1-206ENST00000559389 R3HDMLQ9H3Y0 253 aa25.39■■□□□ 1.66
SNX1-206ENST00000559389 SPDYE16A6NNV3 312 aaPredicted RBP25.38■■□□□ 1.65
SNX1-206ENST00000559389 FLOT1O75955 427 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 HERVK_113P62684 666 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 LBX2Q6XYB7 198 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 SGMS1Q86VZ5 419 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 TMTC2Q8N394 836 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 P2RX7Q99572 595 aaKnown RBP25.38■■□□□ 1.65
SNX1-206ENST00000559389 FBXO28Q9NVF7 368 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 CYP46A1Q9Y6A2 500 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 CEP350Q5VT06 3117 aa25.38■■□□□ 1.65
SNX1-206ENST00000559389 ZNF543Q08ER8 600 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 COG2Q14746 738 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 FBXL16Q8N461 479 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 GTF3C2Q8WUA4 911 aaPredicted RBP25.37■■□□□ 1.65
SNX1-206ENST00000559389 CHMP4CQ96CF2 233 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 AGXT2Q9BYV1 514 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 PPP1R9AQ9ULJ8 1098 aa25.37■■□□□ 1.65
SNX1-206ENST00000559389 FRMPD2Q68DX3 1309 aaPredicted RBP25.37■■□□□ 1.65
SNX1-206ENST00000559389 FOXN1O15353 648 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 DDAH1O94760 285 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 DSG3P32926 999 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 GCLCP48506 637 aaPredicted RBP25.36■■□□□ 1.65
SNX1-206ENST00000559389 NOM1Q5C9Z4 860 aaKnown RBP25.36■■□□□ 1.65
SNX1-206ENST00000559389 KCTD1Q719H9 257 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 CATIPQ7Z7H3 387 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 ZNF654Q8IZM8 581 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 SLF1Q9BQI6 1058 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 TSKSQ9UJT2 592 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 FEM1BQ9UK73 627 aa25.36■■□□□ 1.65
SNX1-206ENST00000559389 ISY1Q9ULR0 285 aaKnown RBP25.36■■□□□ 1.65
SNX1-206ENST00000559389 CCDC69A6NI79 296 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 PLA2G6O60733 806 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 STAT2P52630 851 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 TROAPQ12815 778 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 POTEEQ6S8J3 1075 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 C17orf99Q6UX52 265 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 NFXL1Q6ZNB6 911 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 Q6ZUG5 572 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 ATG4CQ96DT6 458 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 TBC1D32Q96NH3 1257 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 CPA4Q9UI42 421 aa25.35■■□□□ 1.65
SNX1-206ENST00000559389 TMEM232C9JQI7 657 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 BCRP11274 1271 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 GRM4Q14833 912 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 ASPRV1Q53RT3 343 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 GPATCH4Q5T3I0 446 aaKnown RBP25.34■■□□□ 1.65
SNX1-206ENST00000559389 FAM160B2Q86V87 743 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 KIF2CQ99661 725 aa25.34■■□□□ 1.65
SNX1-206ENST00000559389 HSPA8P11142 646 aaKnown RBP25.33■■□□□ 1.65
SNX1-206ENST00000559389 FGD1P98174 961 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 APOA5Q6Q788 366 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 BTNL9Q6UXG8 535 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 BRF1Q92994 677 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 MYL10Q9BUA6 226 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 GPCPD1Q9NPB8 672 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 HOXC10Q9NYD6 342 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 MORF4L1Q9UBU8 362 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 ADAMTS5Q9UNA0 930 aa25.33■■□□□ 1.65
SNX1-206ENST00000559389 COL11A1P12107 1806 aaPredicted RBP25.33■■□□□ 1.64
SNX1-206ENST00000559389 GPR25O00155 361 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 PARP1P09874 1014 aaKnown RBP25.32■■□□□ 1.64
SNX1-206ENST00000559389 FAM110CQ1W6H9 321 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 TTBK2Q6IQ55 1244 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 ANKRD13CQ8N6S4 541 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 PRPF38AQ8NAV1 312 aaKnown RBP25.32■■□□□ 1.64
SNX1-206ENST00000559389 MAP3K14Q99558 947 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 TXNRD2Q9NNW7 524 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 PDRG1Q9NUG6 133 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 BRPF3Q9ULD4 1205 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 SLC12A7Q9Y666 1083 aa25.32■■□□□ 1.64
SNX1-206ENST00000559389 GOLGA8HP0CJ92 632 aa25.31■■□□□ 1.64
SNX1-206ENST00000559389 CTCFP49711 727 aaPredicted RBP25.31■■□□□ 1.64
SNX1-206ENST00000559389 IKQ13123 557 aaPredicted RBP25.31■■□□□ 1.64
SNX1-206ENST00000559389 TOB2Q14106 344 aaPredicted RBP25.31■■□□□ 1.64
SNX1-206ENST00000559389 SAMD1Q6SPF0 538 aaPredicted RBP25.31■■□□□ 1.64
SNX1-206ENST00000559389 MB21D1Q8N884 522 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms