RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MED4Q9NPJ6 270 aa19.79■□□□□ 0.76
SYNE3-202ENST00000553340 EPN1Q9Y6I3 576 aaPredicted RBP19.79■□□□□ 0.76
SYNE3-202ENST00000553340 NELFBQ8WX92 580 aa19.79■□□□□ 0.76
SYNE3-202ENST00000553340 TNFRSF25Q93038 417 aa19.79■□□□□ 0.76
SYNE3-202ENST00000553340 RMND1Q9NWS8 449 aa19.79■□□□□ 0.76
SYNE3-202ENST00000553340 ANAPC4Q9UJX5 808 aa19.79■□□□□ 0.76
SYNE3-202ENST00000553340 PLEKHA8P1O95397 391 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 BCAMP50895 628 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 IFIT1BQ5T764 474 aaKnown RBP19.78■□□□□ 0.76
SYNE3-202ENST00000553340 ZNF658Q5TYW1 1059 aaPredicted RBP19.78■□□□□ 0.76
SYNE3-202ENST00000553340 NCAPH2Q6IBW4 605 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 RPS6KA5O75582 802 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 NDUFA10O95299 355 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 CYP7A1P22680 504 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 UBXN1Q04323 297 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 PDXDC2PQ6P474 469 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 SDR42E1Q8WUS8 393 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 LCMT1Q9UIC8 334 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 GUCA1BQ9UMX6 200 aa19.78■□□□□ 0.76
SYNE3-202ENST00000553340 RRP15Q9Y3B9 282 aaKnown RBP19.78■□□□□ 0.76
SYNE3-202ENST00000553340 CALM1P0DP23 149 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 CALM2P0DP24 149 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 CALM3P0DP25 149 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 C10orf67Q8IYJ2 551 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 ZBTB9Q96C00 473 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 VGLL3A8MV65 326 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 NOM1Q5C9Z4 860 aaKnown RBP19.77■□□□□ 0.76
SYNE3-202ENST00000553340 CHP1Q99653 195 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 HAUS4Q9H6D7 363 aa19.77■□□□□ 0.76
SYNE3-202ENST00000553340 LRRIQ3A6PVS8 624 aaPredicted RBP19.76■□□□□ 0.75
SYNE3-202ENST00000553340 ERVV-1B6SEH8 477 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 CYP19A1P11511 503 aaPredicted RBP19.76■□□□□ 0.75
SYNE3-202ENST00000553340 PSMD14O00487 310 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 MCM3P25205 808 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 NPY5RQ15761 445 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 TRAPPC11Q7Z392 1133 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 IQCA1Q86XH1 822 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 OR8K1Q8NGG5 319 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 MTRQ99707 1265 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 ZBTB1Q9Y2K1 713 aa19.76■□□□□ 0.75
SYNE3-202ENST00000553340 MAGEB6P1A0A0J9YX57 407 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 H7C1D1 291 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 PHACTR2O75167 634 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 TRAPPC10P48553 1259 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 EVA1CP58658 441 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 VIPAS39Q9H9C1 493 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 REXO2Q9Y3B8 237 aaKnown RBP19.75■□□□□ 0.75
SYNE3-202ENST00000553340 MYH2Q9UKX2 1941 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 NUP98P52948 1817 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 TRIM66O15016 1216 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 RPN1P04843 607 aaKnown RBP19.75■□□□□ 0.75
SYNE3-202ENST00000553340 TROAPQ12815 778 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 DZIP3Q86Y13 1208 aaKnown RBP19.75■□□□□ 0.75
SYNE3-202ENST00000553340 ZNF34Q8IZ26 560 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 PLCH1Q4KWH8 1693 aa19.75■□□□□ 0.75
SYNE3-202ENST00000553340 USP14P54578 494 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 TSR1Q2NL82 804 aaKnown RBP19.74■□□□□ 0.75
SYNE3-202ENST00000553340 MAP9Q49MG5 647 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 TMTC3Q6ZXV5 915 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 MKRN1Q9UHC7 482 aaKnown RBP19.74■□□□□ 0.75
SYNE3-202ENST00000553340 LUC7L2Q9Y383 392 aaKnown RBP19.74■□□□□ 0.75
SYNE3-202ENST00000553340 DISP2A7MBM2 1401 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 TTC26A0AVF1 554 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 ADGRA1Q86SQ6 560 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 GOLGA6L1Q8N7Z2 621 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 CTCFLQ8NI51 663 aaPredicted RBP19.74■□□□□ 0.75
SYNE3-202ENST00000553340 TRIM10Q9UDY6 481 aa19.74■□□□□ 0.75
SYNE3-202ENST00000553340 SOS2Q07890 1332 aaPredicted RBP19.74■□□□□ 0.75
SYNE3-202ENST00000553340 PARP1P09874 1014 aaKnown RBP19.73■□□□□ 0.75
SYNE3-202ENST00000553340 PRCPP42785 496 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 PIK3AP1Q6ZUJ8 805 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 IQSEC3Q9UPP2 1182 aaPredicted RBP19.73■□□□□ 0.75
SYNE3-202ENST00000553340 MAPK8IP1Q9UQF2 711 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 GDAQ9Y2T3 454 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 SAR1BQ9Y6B6 198 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 DDAH1O94760 285 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 MCM7P33993 719 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 TNNT3P45378 269 aaPredicted RBP19.73■□□□□ 0.75
SYNE3-202ENST00000553340 MB21D1Q8N884 522 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 DNAJC7Q99615 494 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 FAM204AQ9H8W3 233 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 ABCF2Q9UG63 623 aa19.73■□□□□ 0.75
SYNE3-202ENST00000553340 SMIM22K7EJ46 135 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 ENC1O14682 589 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 NLRP5P59047 1200 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 RPGRIP1Q96KN7 1286 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 A0A1W2PQC6 194 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 IGHMBP2P38935 993 aaKnown RBP19.72■□□□□ 0.75
SYNE3-202ENST00000553340 AARSP49588 968 aaKnown RBP eCLIP19.72■□□□□ 0.75
SYNE3-202ENST00000553340 IL17AQ16552 155 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 CCDC122Q5T0U0 273 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 EHBP1Q8NDI1 1231 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 CNTNAP5Q8WYK1 1306 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 LGALS16A8MUM7 142 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 KRT83P78385 493 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 ARL6IP4Q66PJ3 421 aaKnown RBP19.72■□□□□ 0.75
SYNE3-202ENST00000553340 IRF2BP1Q8IU81 584 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 SLC4A9Q96Q91 983 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 HDAC6Q9UBN7 1215 aa19.72■□□□□ 0.75
SYNE3-202ENST00000553340 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms