RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ACTN4O43707 911 aaKnown RBP12.66□□□□□ -0.38
CUX1-212ENST00000547394 GRM4Q14833 912 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 PIGSQ96S52 555 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 ARID3AQ99856 593 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 TRMT1Q9NXH9 659 aaKnown RBP12.66□□□□□ -0.38
CUX1-212ENST00000547394 TUBE1Q9UJT0 475 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 TMEM232C9JQI7 657 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 PPP2R5BQ15173 497 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 BLIDQ8IZY5 108 aa12.66□□□□□ -0.38
CUX1-212ENST00000547394 SLC16A2P36021 539 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 AOC3Q16853 763 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 CDC42EP5Q6NZY7 148 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 COA1Q9GZY4 146 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 TMEM60Q9H2L4 133 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 ADAMTSL1Q8N6G6 1762 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 GAKO14976 1311 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 RXRBP28702 533 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 TBC1D22AQ8WUA7 517 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 COA7Q96BR5 231 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 TIGD1Q96MW7 591 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 MAPK8IP1Q9UQF2 711 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 ANKRD31Q8N7Z5 1873 aa12.65□□□□□ -0.38
CUX1-212ENST00000547394 UQCRHLA0A096LP55 91 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 UQCRHP07919 91 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 TTBK2Q6IQ55 1244 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 ZSCAN29Q8IWY8 852 aaPredicted RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 MASTLQ96GX5 879 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 MED15Q96RN5 788 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 TMEM260Q9NX78 707 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 CEP131Q9UPN4 1083 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 SCAF8Q9UPN6 1271 aaKnown RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 LAMB1P07942 1786 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 CAVIN2O95810 425 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 SERPINC1P01008 464 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 PARP1P09874 1014 aaKnown RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 PDE6BP35913 854 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 NAPAP54920 295 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 FANCCQ00597 558 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 KARSQ15046 597 aaKnown RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 JAKMIP3Q5VZ66 844 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 APOBEC3HQ6NTF7 200 aaKnown RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 SARM1Q6SZW1 724 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 SMARCE1Q969G3 411 aa12.64□□□□□ -0.39
CUX1-212ENST00000547394 BIN2Q9UBW5 565 aaPredicted RBP12.64□□□□□ -0.39
CUX1-212ENST00000547394 FAM237AA0A1B0GTK4 181 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 CCDC194A0A1B0GVG4 234 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 PALM3A6NDB9 673 aaPredicted RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 STXBP3O00186 592 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 PLSCR1O15162 318 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 TAL1P17542 331 aaPredicted RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 KCTD1Q719H9 257 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 CREBRFQ8IUR6 639 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 LRRC8AQ8IWT6 810 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 NEDD1Q8NHV4 660 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 TMX4Q9H1E5 349 aaPredicted RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 SAMSN1Q9NSI8 373 aaKnown RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 PCDHA6Q9UN73 950 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 PCDHA8Q9Y5H6 950 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 ROBO3Q96MS0 1386 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 SNAP25P60880 206 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 CFAP100Q494V2 611 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 GJA10Q969M2 543 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 MRFAP1L1Q96HT8 127 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 PCDHA4Q9UN74 947 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 MAST2Q6P0Q8 1798 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 DDX60LQ5H9U9 1706 aaKnown RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 C21orf2O43822 256 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 SKILP12757 684 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 CD44P16070 742 aaKnown RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 PLCG2P16885 1265 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 ALDH1B1P30837 517 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 CRKP46108 304 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 MYL5Q02045 173 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 LETM2Q2VYF4 491 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 ZNF772Q68DY9 489 aaPredicted RBP12.63□□□□□ -0.39
CUX1-212ENST00000547394 RASSF8Q8NHQ8 419 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 ZNF592Q92610 1267 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 PAGE5Q96GU1 130 aa12.63□□□□□ -0.39
CUX1-212ENST00000547394 NAV1Q8NEY1 1877 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 H0YIN7 160 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 ATP2C1P98194 919 aaPredicted RBP12.62□□□□□ -0.39
CUX1-212ENST00000547394 POTEAQ6S8J7 498 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 DEFB132Q7Z7B7 95 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 EEF2KMTQ96G04 330 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 MTRQ99707 1265 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 NFE2L3Q9Y4A8 694 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 DDTLA6NHG4 134 aaPredicted RBP12.62□□□□□ -0.39
CUX1-212ENST00000547394 ECE2O60344 883 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 UBASH3AP57075 661 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 DHX8Q14562 1220 aaKnown RBP12.62□□□□□ -0.39
CUX1-212ENST00000547394 TEKT1Q969V4 418 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 FAM163AQ96GL9 167 aaPredicted RBP12.62□□□□□ -0.39
CUX1-212ENST00000547394 SERPINB13Q9UIV8 391 aa12.62□□□□□ -0.39
CUX1-212ENST00000547394 SMCO2A6NFE2 343 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 GDF11O95390 407 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 PDHBP11177 359 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 DPYDQ12882 1025 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 CUL4BQ13620 913 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 ARMCX5Q6P1M9 558 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms