RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CCDC192P0DO97 292 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 BPIFB3P59826 476 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 DIXDC1Q155Q3 683 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 PLIN2Q99541 437 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 POLG2Q9UHN1 485 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 CAMSAP1Q5T5Y3 1602 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 SEC24DO94855 1032 aaPredicted RBP9.91□□□□□ -0.82
VPS13D-212ENST00000543766 GYS1P13807 737 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 SKIV2L2P42285 1042 aaKnown RBP9.91□□□□□ -0.82
VPS13D-212ENST00000543766 POLD2P49005 469 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 PDE6CP51160 858 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 TUBA1BP68363 451 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 TUBA1AQ71U36 451 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 PTF1AQ7RTS3 328 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 ARHGAP18Q8N392 663 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 FAM163AQ96GL9 167 aaPredicted RBP9.91□□□□□ -0.82
VPS13D-212ENST00000543766 TCEANC2Q96MN5 208 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 DDX21Q9NR30 783 aaKnown RBP eCLIP9.91□□□□□ -0.82
VPS13D-212ENST00000543766 ZNF330Q9Y3S2 320 aaPredicted RBP9.91□□□□□ -0.82
VPS13D-212ENST00000543766 SLC4A4Q9Y6R1 1079 aa9.91□□□□□ -0.82
VPS13D-212ENST00000543766 C2orf81A6NN90 581 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 SFI1A8K8P3 1242 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 RTCAO00442 366 aaKnown RBP9.9□□□□□ -0.82
VPS13D-212ENST00000543766 SMIM24O75264 130 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 TRIML2Q8N7C3 387 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 APPL2Q8NEU8 664 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 SPAG5Q96R06 1193 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 RBM42Q9BTD8 480 aaKnown RBP9.9□□□□□ -0.82
VPS13D-212ENST00000543766 DRC3Q9H069 523 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 ACBD3Q9H3P7 528 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 EPB41L4AQ9HCS5 686 aaPredicted RBP9.9□□□□□ -0.82
VPS13D-212ENST00000543766 RTEL1Q9NZ71 1219 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 TBKBP1A7MCY6 615 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 C19orf81C9J6K1 198 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 AP2B1P63010 937 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 TMEM151BQ8IW70 566 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 GALNT6Q8NCL4 622 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 CUL5Q93034 780 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 HOXC10Q9NYD6 342 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 MOSPD1Q9UJG1 213 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 CROTQ9UKG9 612 aa9.9□□□□□ -0.82
VPS13D-212ENST00000543766 XIRP1Q702N8 1843 aaKnown RBP9.9□□□□□ -0.82
VPS13D-212ENST00000543766 PTPRMP28827 1452 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 GOLGA6L4A6NEF3 574 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 TIPRLO75663 272 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 STAM2O75886 525 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 GUCY2FP51841 1108 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 MRPS35P82673 323 aaKnown RBP9.9□□□□□ -0.83
VPS13D-212ENST00000543766 CUL3Q13618 768 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 VPS53Q5VIR6 699 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 ARL6IP6Q8N6S5 226 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 ARHGEF2Q92974 986 aaKnown RBP9.9□□□□□ -0.83
VPS13D-212ENST00000543766 AP1M1Q9BXS5 423 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 TSPY26PQ9H489 355 aa9.9□□□□□ -0.83
VPS13D-212ENST00000543766 SEPT11Q9NVA2 429 aaKnown RBP9.9□□□□□ -0.83
VPS13D-212ENST00000543766 A0A087WUV0 522 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 NDC80O14777 642 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 MAJINQ3KP22 176 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 ERMNQ8TAM6 284 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 ZNF75CPQ92670 426 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 JAKMIP2Q96AA8 810 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 DHTKD1Q96HY7 919 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 CLIC5Q9NZA1 410 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 ZBTB21Q9ULJ3 1066 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 USTQ9Y2C2 406 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 TUBGCP6Q96RT7 1819 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 MBD3O95983 291 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 GLULP15104 373 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 TNNI3KQ59H18 835 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 FAM173BQ6P4H8 233 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PALB2Q86YC2 1186 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 MSANTD4Q8NCY6 345 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 NELL2Q99435 816 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 CLSTN2Q9H4D0 955 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 ZCCHC17Q9NP64 241 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PAPOLBQ9NRJ5 636 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 VTI1BQ9UEU0 232 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 CEP131Q9UPN4 1083 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 USH1CQ9Y6N9 552 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 IQCA1LA6NCM1 817 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 SPDYE3A6NKU9 549 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 KIF2AO00139 706 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PRPF40AO75400 957 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PNMA6AP0CW24 399 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 FERP16591 822 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 HABP4Q5JVS0 413 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 NCCRP1Q6ZVX7 275 aaPredicted RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 DAAM2Q86T65 1068 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 RBM41Q96IZ5 413 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 VPS50Q96JG6 964 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 CCT7Q99832 543 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PLEKHA4Q9H4M7 779 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 PLSCR2Q9NRY7 297 aa9.89□□□□□ -0.83
VPS13D-212ENST00000543766 DDX56Q9NY93 547 aaKnown RBP9.89□□□□□ -0.83
VPS13D-212ENST00000543766 FOXN3O00409 490 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 POTEIP0CG38 1075 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 ACTN3Q08043 901 aaPredicted RBP9.88□□□□□ -0.83
VPS13D-212ENST00000543766 PRKG1Q13976 671 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 TSC22D3Q99576 134 aa9.88□□□□□ -0.83
VPS13D-212ENST00000543766 PYCARDQ9ULZ3 195 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms