RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 FLOT1O75955 427 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 BMP3P12645 472 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 MCCP23508 829 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 MCM5P33992 734 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 SLC1A4P43007 532 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 SP3Q02447 781 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 SART3Q15020 963 aaKnown RBP14.03□□□□□ -0.16
VPS13D-204ENST00000469054 ADCK5Q3MIX3 580 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 IFIT1BQ5T764 474 aaKnown RBP14.03□□□□□ -0.16
VPS13D-204ENST00000469054 GMCL1Q96IK5 515 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 MTA3Q9BTC8 594 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 KAT14Q9H8E8 782 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 PRDM10Q9NQV6 1147 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 SNX14Q9Y5W7 946 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 MYH8P13535 1937 aa14.02□□□□□ -0.16
VPS13D-204ENST00000469054 LAMA4Q16363 1823 aa14.02□□□□□ -0.16
VPS13D-204ENST00000469054 MYPNQ86TC9 1320 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 SPDYE16A6NNV3 312 aaPredicted RBP14.02□□□□□ -0.17
VPS13D-204ENST00000469054 PRC1O43663 620 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 SEC24BO95487 1268 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 COL9A3Q14050 684 aaPredicted RBP14.02□□□□□ -0.17
VPS13D-204ENST00000469054 FAM110CQ1W6H9 321 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 TMEM67Q5HYA8 995 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 LBX2Q6XYB7 198 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 ANKRD13CQ8N6S4 541 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 PNMA1Q8ND90 353 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 IGDCC4Q8TDY8 1250 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 FBXO28Q9NVF7 368 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 MTMR7Q9Y216 660 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 PTPRFP10586 1907 aa14.02□□□□□ -0.17
VPS13D-204ENST00000469054 LOC285556D6RIA3 1793 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 HMGB1P09429 215 aaKnown RBP14.01□□□□□ -0.17
VPS13D-204ENST00000469054 SNHG28P0DPA3 235 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 PDHBP11177 359 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 PSMA5P28066 241 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 EXOSC10Q01780 885 aaKnown RBP14.01□□□□□ -0.17
VPS13D-204ENST00000469054 WTAPQ15007 396 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 POTEEQ6S8J3 1075 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 KCTD1Q719H9 257 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 DHX32Q7L7V1 743 aaKnown RBP14.01□□□□□ -0.17
VPS13D-204ENST00000469054 DCAF4Q8WV16 495 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 CHMP4CQ96CF2 233 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 TMEM87BQ96K49 555 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 JAKMIP1Q96N16 626 aaKnown RBP14.01□□□□□ -0.17
VPS13D-204ENST00000469054 TXNRD2Q9NNW7 524 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 RBPJLQ9UBG7 517 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 MORF4L1Q9UBU8 362 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 FEM1BQ9UK73 627 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 PPP1R9AQ9ULJ8 1098 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 RABGAP1Q9Y3P9 1069 aa14.01□□□□□ -0.17
VPS13D-204ENST00000469054 WDR19Q8NEZ3 1342 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 TMEM232C9JQI7 657 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 PLA2G6O60733 806 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 LACTBP83111 547 aaPredicted RBP14□□□□□ -0.17
VPS13D-204ENST00000469054 CCDC96Q2M329 555 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 Q3C1V9 767 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 RASGRP2Q7LDG7 609 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 TMTC2Q8N394 836 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 MB21D1Q8N884 522 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 PRPF38AQ8NAV1 312 aaKnown RBP14□□□□□ -0.17
VPS13D-204ENST00000469054 GPRC5AQ8NFJ5 357 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 ATG4CQ96DT6 458 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 ERO1AQ96HE7 468 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 SLF1Q9BQI6 1058 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 PAGR1Q9BTK6 254 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 SENP2Q9HC62 589 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 ISY1Q9ULR0 285 aaKnown RBP14□□□□□ -0.17
VPS13D-204ENST00000469054 ADAMTS5Q9UNA0 930 aa14□□□□□ -0.17
VPS13D-204ENST00000469054 SH2B2O14492 632 aaPredicted RBP13.99□□□□□ -0.17
VPS13D-204ENST00000469054 PEX10O60683 326 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 CNMDO75829 334 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 STAT2P52630 851 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 ERVK-9P63128 1117 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 ERVK-24P63145 666 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 ZNF543Q08ER8 600 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 KIF22Q14807 665 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 BLOC1S2Q6QNY1 142 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 FAM160B2Q86V87 743 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 CD99L2Q8TCZ2 262 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 CHURC1Q8WUH1 139 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 LRRC2Q9BYS8 371 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 LY9Q9HBG7 655 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 GPHNQ9NQX3 736 aaPredicted RBP13.99□□□□□ -0.17
VPS13D-204ENST00000469054 BTBD7Q9P203 1132 aa13.99□□□□□ -0.17
VPS13D-204ENST00000469054 VWA5AO00534 786 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 LIFRP42702 1097 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 ANAPC15P60006 121 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 GPATCH4Q5T3I0 446 aaKnown RBP13.98□□□□□ -0.17
VPS13D-204ENST00000469054 TTBK2Q6IQ55 1244 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 BTNL9Q6UXG8 535 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 CATIPQ7Z7H3 387 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 KIFC2Q96AC6 838 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 TCEANC2Q96MN5 208 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 ARHGAP39Q9C0H5 1083 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 GPCPD1Q9NPB8 672 aa13.98□□□□□ -0.17
VPS13D-204ENST00000469054 FRMPD2Q68DX3 1309 aaPredicted RBP13.97□□□□□ -0.17
VPS13D-204ENST00000469054 PARP1P09874 1014 aaKnown RBP13.97□□□□□ -0.17
VPS13D-204ENST00000469054 FDX1P10109 184 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CPA1P15085 419 aa13.97□□□□□ -0.17
VPS13D-204ENST00000469054 CASTP20810 708 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms