RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 RABGAP1Q9Y3P9 1069 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 RLFQ13129 1914 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 FMNL1O95466 1100 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 GNRH1P01148 92 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 MCCP23508 829 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 CTGFP29279 349 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 SLC1A4P43007 532 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 FCGRTP55899 365 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 ERVK-9P63128 1117 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 ERVK-24P63145 666 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 PKN2Q16513 984 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 Q3C1V9 767 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 SAMD1Q6SPF0 538 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 CHMP4CQ96CF2 233 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 GMCL1Q96IK5 515 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 TRIM47Q96LD4 638 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 FBXO28Q9NVF7 368 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 MTMR7Q9Y216 660 aa17.06■□□□□ 0.32
SQSTM1-205ENST00000464493 TNKSO95271 1327 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 CNMDO75829 334 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 MB21D1Q8N884 522 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 ENAHQ8N8S7 591 aaPredicted RBP17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 ATG4CQ96DT6 458 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 SLF1Q9BQI6 1058 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 MCOLN1Q9GZU1 580 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 BTBD7Q9P203 1132 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 FEM1BQ9UK73 627 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 PPP1R9AQ9ULJ8 1098 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 ISY1Q9ULR0 285 aaKnown RBP17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 ADAMTS5Q9UNA0 930 aa17.05■□□□□ 0.32
SQSTM1-205ENST00000464493 MGAMO43451 1857 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 ZKSCAN1P17029 563 aaPredicted RBP17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 HOXD10P28358 340 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 TSGA10IPQ3SY00 556 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 MB21D2Q8IYB1 491 aaPredicted RBP17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 TNS4Q8IZW8 715 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 PRPF38AQ8NAV1 312 aaKnown RBP17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 DCAF4Q8WV16 495 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 KAT14Q9H8E8 782 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 PARP14Q460N5 1801 aa17.04■□□□□ 0.32
SQSTM1-205ENST00000464493 ZSWIM8A7E2V4 1837 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 ERICH2A1L162 156 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 TMEM232C9JQI7 657 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 TNPO2O14787 897 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 IFIT3O14879 490 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 EPB41L2O43491 1005 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 CCNA1P78396 465 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 SART3Q15020 963 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 SEC23AQ15436 765 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 IFIT1BQ5T764 474 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 KCTD1Q719H9 257 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 CHST3Q7LGC8 479 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 CCAR1Q8IX12 1150 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 RASEFQ8IZ41 740 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 PNMA1Q8ND90 353 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 CHURC1Q8WUH1 139 aa17.03■□□□□ 0.32
SQSTM1-205ENST00000464493 VWA5AO00534 786 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 PLA2G6O60733 806 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 PDHBP11177 359 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 MCM5P33992 734 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 HSPA4P34932 840 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 STAT2P52630 851 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 KRT32Q14532 448 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 CCDC96Q2M329 555 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 FBXO46Q6PJ61 603 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 RASGRP2Q7LDG7 609 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 FAM160B2Q86V87 743 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 KCNB2Q92953 911 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 KIFC2Q96AC6 838 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 COA7Q96BR5 231 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 USP26Q9BXU7 913 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 SPATC1LQ9H0A9 340 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 SRRDQ9UH36 339 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 PTPN22Q9Y2R2 807 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 GTF3C3Q9Y5Q9 886 aa17.02■□□□□ 0.32
SQSTM1-205ENST00000464493 ZBED4O75132 1171 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 SNHG28P0DPA3 235 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 MAPK4P31152 587 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 PRMT2P55345 433 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 ANTXR2P58335 489 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 IKQ13123 557 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 PLS1Q14651 629 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 TMEM132BQ14DG7 1078 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 WTAPQ15007 396 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 IGDCC4Q8TDY8 1250 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 NEK1Q96PY6 1258 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 MTA3Q9BTC8 594 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 PORCNQ9H237 461 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 DOCK3Q8IZD9 2030 aa17.01■□□□□ 0.31
SQSTM1-205ENST00000464493 A0A0G2JMZ2 1700 aa17■□□□□ 0.31
SQSTM1-205ENST00000464493 PRC1O43663 620 aa17■□□□□ 0.31
SQSTM1-205ENST00000464493 ZNF543Q08ER8 600 aa17■□□□□ 0.31
SQSTM1-205ENST00000464493 TMEM67Q5HYA8 995 aa17■□□□□ 0.31
SQSTM1-205ENST00000464493 MOV10L1Q9BXT6 1211 aaKnown RBP17■□□□□ 0.31
SQSTM1-205ENST00000464493 CWC22Q9HCG8 908 aaKnown RBP17■□□□□ 0.31
SQSTM1-205ENST00000464493 GPCPD1Q9NPB8 672 aa17■□□□□ 0.31
SQSTM1-205ENST00000464493 CTDP1Q9Y5B0 961 aaPredicted RBP17■□□□□ 0.31
SQSTM1-205ENST00000464493 COL11A1P12107 1806 aaPredicted RBP17■□□□□ 0.31
SQSTM1-205ENST00000464493 FRMPD2Q68DX3 1309 aaPredicted RBP16.99■□□□□ 0.31
SQSTM1-205ENST00000464493 EIF5BO60841 1220 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms