RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 PNMA3Q9UL41 463 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 FRMPD2Q68DX3 1309 aaPredicted RBP13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 GREB1LQ9C091 1923 aaPredicted RBP13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 WDR46O15213 610 aaKnown RBP13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 NOVP48745 357 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 HERVK_113P62684 666 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 SEC23AQ15436 765 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 RAB11FIP4Q86YS3 637 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 GMCL1P1Q8NEA9 526 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 IGDCC4Q8TDY8 1250 aa13.75□□□□□ -0.21
DEPDC4-202ENST00000378244 TMEM232C9JQI7 657 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 BMP3P12645 472 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 BLOC1S2Q6QNY1 142 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 NFXL1Q6ZNB6 911 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 DHX32Q7L7V1 743 aaKnown RBP13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 KCNB2Q92953 911 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 KIFC2Q96AC6 838 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 MYL10Q9BUA6 226 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 GPCPD1Q9NPB8 672 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 SAGE1Q9NXZ1 904 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 GPR25O00155 361 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 EPB41L2O43491 1005 aaKnown RBP13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 SLC16A2P36021 539 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 COG2Q14746 738 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 CCDC178Q5BJE1 867 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 ZNF296Q8WUU4 475 aaPredicted RBP13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 CPVLQ9H3G5 476 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 ZCCHC17Q9NP64 241 aaKnown RBP13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 SLC45A1Q9Y2W3 748 aa13.74□□□□□ -0.21
DEPDC4-202ENST00000378244 HSPA8P11142 646 aaKnown RBP13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 PDHBP11177 359 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 RXRAP19793 462 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 SLC4A3P48751 1232 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 TTBK2Q6IQ55 1244 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 POTEEQ6S8J3 1075 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 NUP133Q8WUM0 1156 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 ATG4CQ96DT6 458 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 LY9Q9HBG7 655 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 TXNRD2Q9NNW7 524 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 NAP1L2Q9ULW6 460 aaPredicted RBP13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 SPDYE16A6NNV3 312 aaPredicted RBP13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 PSMA5P28066 241 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 CTCFP49711 727 aaPredicted RBP13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 NT5C2P49902 561 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 CCDC144CPQ8IYA2 1237 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 LARP6Q9BRS8 491 aaKnown RBP13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 HOXC10Q9NYD6 342 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 MYH4Q9Y623 1939 aa13.73□□□□□ -0.21
DEPDC4-202ENST00000378244 SH2B2O14492 632 aaPredicted RBP13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 HMGB1P09429 215 aaKnown RBP13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 SNAP25P60880 206 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 EXOSC10Q01780 885 aaKnown RBP13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 PLS1Q14651 629 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 C17orf99Q6UX52 265 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 GMCL1Q96IK5 515 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 TMEM87BQ96K49 555 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 RBPJLQ9UBG7 517 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 HTTP42858 3142 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 CCDC69A6NI79 296 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 EIF5BO60841 1220 aaKnown RBP13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 STAT2P52630 851 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 SP3Q02447 781 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 Q6ZUG5 572 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 ANKS1AQ92625 1134 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 UBA5Q9GZZ9 404 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 SYNPO2Q9UMS6 1093 aa13.72□□□□□ -0.21
DEPDC4-202ENST00000378244 LOC285556D6RIA3 1793 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 RPS6KB1P23443 525 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 DSG3P32926 999 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 PLCB2Q00722 1185 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 Q3C1V9 767 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 RUFY3Q7L099 469 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 CPXCR1Q8N123 301 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 BRF1Q92994 677 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 SLF1Q9BQI6 1058 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 C22orf23Q9BZE7 217 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 ARHGAP39Q9C0H5 1083 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 BTBD7Q9P203 1132 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 CYP46A1Q9Y6A2 500 aa13.71□□□□□ -0.21
DEPDC4-202ENST00000378244 ZNF543Q08ER8 600 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 CATIPQ7Z7H3 387 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 MICU3Q86XE3 530 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 STAG2Q8N3U4 1231 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 PRPF38AQ8NAV1 312 aaKnown RBP13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 CFHR5Q9BXR6 569 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 ZSWIM6Q9HCJ5 1215 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 PPP1R9AQ9ULJ8 1098 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 SLC12A7Q9Y666 1083 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 ADGRA2Q96PE1 1338 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 DHX16O60231 1041 aaKnown RBP13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 FKTNO75072 461 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 BCRP11274 1271 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 GCLCP48506 637 aaPredicted RBP13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 CAP1Q01518 475 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 ZNF654Q8IZM8 581 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 CD99L2Q8TCZ2 262 aa13.7□□□□□ -0.22
DEPDC4-202ENST00000378244 DCAF4Q8WV16 495 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms